-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
320 lines (315 loc) · 13 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
<!DOCTYPE html>
<html>
<head>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.5/css/bootstrap.min.css">
<script src="js/bootstrap.min.js"></script>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.5/js/bootstrap.min.js"></script>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css">
<link rel="stylesheet" href="./basic.css">
<script src="./smooth_scroll.js"></script>
<script type="text/javascript" src="js/jquery.hoverdir.js"></script>
<script src="js/modernizr.custom.97074.js"></script>
<script src="js/sticky-div.js"></script>
</head>
<body data-spy="scroll" data-target="#navbar">
<div class="jumbotron" id="jumbo">
<div class="container text-center">
<img src='images/ah_simple.svg' width=300px>
<h1>Alex Hernsdorf</h1>
</div>
</div>
<div id="stick_nav">
<nav class="navbar" id="navbar" role="navigation">
<ul class="nav nav-pills nav-stacked">
<li><a href="#profile">Profile</a></li>
<li><a href="#education">Education</a></li>
<li><a href="#skills">Skills</a></li>
<li><a href="#experiences">Experiences</a></li>
<li><a href="#projects">Projects</a></li>
<li><a href="#contact">Contact</a></li>
</ul>
</nav>
</div>
<div id="profile" class="background-light">
<div class="container supporting">
<div id="about_me" class="row text-center section_header" style="border-bottom: none">
<div class="col-md-6 col-md-offset-3" style="margin-right: 100px">
<h1>About me</h1>
<p>I'm a second year PhD student in the Plant and Microbiology department at UC Berkeley. I have extensive experience in sequence analysis and bioinformatics, particularly in the realm of big biological data. I enjoy building useful tools for my research, and am passionate about creating flexible and extensible programs that evolve with my work. I find myself constantly reaching to explore new areas both in my research and in my side projects. </p>
</div>
</div>
</div>
</div>
<div id="education" class="background-dark">
<div class="container supporting">
<div class="row text-center section_header">
<h1>Education</h1>
</div>
<div class="experiences">
<div class="experience row">
<div class="col-md-4">
<h3>UC Berkeley</h3>
<p class="experience_period">Aug 2014 - Present</p>
</div>
<div class="col-md-8">
<strong>PhD Student - Microbiology</strong>
</div>
</div>
<div class="experience row">
<div class="col-md-4">
<h3>Cornell University</h3>
<p class="experience_period">Aug 2010 - May 2014</p>
</div>
<div class="col-md-8">
<strong>Bachelors of Science - Environmental Engineering</strong>
</div>
</div>
</div>
</div>
</div>
<div id="skills" class="background-light">
<div class="container supporting">
<div class="row text-center section_header">
<h1>Skills</h1>
</div>
<div class="skills">
<div class="row">
<div class="col-md-6 col-md-offset-3">
<ul class="no-bullets">
<li>
<span class="ability-title">Bioinformatics</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
</span>
</li>
<li>
<span class="ability-title">Python</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">UNIX/Shell scripting</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">Data mining</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">Web development</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">HTML</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">CSS</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">Relational databases</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">Mathematical modeling</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
<li>
<span class="ability-title">Data visualization</span>
<span class="ability-score pull-right">
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star filled"></span>
<span class="glyphicon glyphicon-star "></span>
<span class="glyphicon glyphicon-star "></span>
</span>
</li>
</ul>
</div>
</div>
</div>
</div>
</div>
<div id="experiences" class="background-dark">
<div class="container supporting">
<div class="row text-center section_header">
<h1>Experiences</h1>
</div>
<div class="experiences">
<div class="experience row">
<div class="col-md-4">
<h3>Geomicrobiology</h3>
<p class="experience_period">Mar 2015 - Present</p>
</div>
<div class="col-md-8">
<strong>Environmental genomics in the Japanese Deep Subsurface </strong>
<ul>
<li>Mined terabases of genomic data from subsurface environments using industry-standard sequence analysis pipelines and custom Python and shell scripts</li>
<li>Designed efficient algorithms for high-throughput processing of biological data</li>
<li>Presented results and designed future studies with team of Japanese chemists and engineers </li>
</ul>
<span class="location"><span class="glyphicon glyphicon-map-marker"></span> UC Berkeley, CA</span>
</div>
</div>
<div class="experience row">
<div class="col-md-4">
<h3>Evolutionary analysis</h3>
<p class="experience_period">Mar 2015 - Present</p>
</div>
<div class="col-md-8">
<strong>Comparative genomics and evolution of uncultivated organisms</strong>
<ul>
<li>Initiated and organized research collaboration with group from Brisbane, AU for evolutionary analysis of genomic diversity in methane-consuming bacteria</li>
<li>Identified and characterized population-level genetic diversity from driving factors using next-gen sequencing</li>
</ul>
<span class="location"><span class="glyphicon glyphicon-map-marker"></span> UC Berkeley, CA</span>
</div>
</div>
<div class="experience row">
<div class="col-md-4">
<h3>Sciral</h3>
<p class="experience_period">Sep 2015 - Present</p>
</div>
<div class="col-md-8">
<a href="#projects"><strong>Sciral: A web application for finding viral science papers </strong></a>
<ul>
<li>Envisioned, designed, and implemented a web app for discovering the most talked-about research papers in any field</li>
<li>Built app with Python/Flask and deployed in cloud using Heroku</li>
<li>Used PostgreSQL databases for storage and post-processing of data from NCBI and Altmetric APIs</li>
</ul>
<span class="location"><span class="glyphicon glyphicon-map-marker"></span> San Francisco, CA</span>
</div>
</div>
<div class="experience row">
<div class="col-md-4">
<h3>Undergraduate research</h3>
<p class="experience_period">Aug 2013 - Dec 2013</p>
</div>
<div class="col-md-8">
<strong>Web applications for integration of "multi-omics" data</strong>
<ul>
<li>Established a locally hosted analysis pipeline for integrating genomic and proteomic data with heavy emphasis on usability </li>
</ul>
<span class="location"><span class="glyphicon glyphicon-map-marker"></span> Cornell University, NY</span>
</div>
</div>
<div class="experience row">
<div class="col-md-4">
<h3>TRC Solutions</h3>
<p class="experience_period">Summer 2011 & Summer 2012</p>
</div>
<div class="col-md-8">
<strong>Environmental Consulting Intern</strong>
<ul>
<li>Negotiated meetings with clients, planned and executed site reconnaissance, and provided writing for over 100 pages of a technical report on the environmental history of an airport</li>
</ul>
<span class="location"><span class="glyphicon glyphicon-map-marker"></span> Windsor, CT</span>
</div>
</div>
</div>
</div>
</div>
<div id="projects" class="background-light">
<div class="container supporting">
<div class="row text-center section_header">
<h1>Projects</h1>
</div>
<div class="row">
<div class="col-md-3">
<ul id="da-thumbs" class="da-thumbs">
<li>
<a href="https://sciral-dev.herokuapp.com/" target="_blank">
<img src="images/sciral.png" width="200" height="175"/>
<div><span>SCIRAL</span></div>
</a>
</li>
</ul>
</div>
<div class="col-md-3">
<ul id="da-thumbs" class="da-thumbs">
<li>
<a href="images/poster.pdf" target="_blank">
<img src="images/poster.png" height="175"/>
<div><span>ELI POSTER</span></div>
</a>
</li>
</ul>
</div>
</div>
</div>
</div>
<div id="contact" class="contact">
<div class="container supporting">
<div class="row text-center section_header">
<h1>Contact</h1>
</div>
<div class="row contact-list">
<div class="col-md-8 col-md-offset-4">
<ul>
<li><a href="https://github.com/alexherns/biotite-scripts" target="_blank"><i class="fa fa-github fa-lg"></i> https://github.com/alexherns/biotite-scripts</a></li>
<li><a href="https://www.linkedin.com/in/ahernsdorf" target="_blank"><i class="fa fa-linkedin fa-lg"></i> https://www.linkedin.com/in/ahernsdorf</a></li>
</ul>
</div>
</div>
</div>
</div>
<script type="text/javascript">
$(function() {
$(' #da-thumbs > li ').each( function() { $(this).hoverdir(); } );
});
</script>
</body>
</html>