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JOSS paper #71

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orbeckst opened this issue Feb 16, 2019 · 4 comments
Closed

JOSS paper #71

orbeckst opened this issue Feb 16, 2019 · 4 comments
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@orbeckst
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Write a short software paper on alchemlyb/alchemtest for JOSS.

  • Author instructions – create a repo and then submit, ~1000 words, see examples
  • authors?
    • any contributor (name on a commit)
    • must edit and ok paper
    • willing to help with revisions (paper/code/docs)

A JOSS paper does not really pre-empt a full scientific paper (such as a "Best practices in free energy calculations" for LiveCOMS, unless this is already in the works) but it would put a citable "stake in the ground".

Opinions @davidlmobley @mrshirts @brycestx @shuail @harlor @dotsdl @alchemistry/alchemlyb ?
@orbeckst orbeckst added the paper label Feb 16, 2019
@mrshirts
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I'm up for it. I apologize for my somewhat slow response rates recently. I'm invested in making sure there's a long term replacement for alchemical-analysis. Am teaching a new class, so response rate will stay a bit slow for a couple of months for larger coding things.

@davidlmobley
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Sounds good to me.

@harlor
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harlor commented Feb 19, 2019

Sounds good to me too! Please, let me know if there's anything I can help you with

@xiki-tempula xiki-tempula linked a pull request Jul 8, 2023 that will close this issue
JOSS paper #328
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@orbeckst orbeckst mentioned this issue Sep 13, 2024
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orbeckst added a commit that referenced this issue Sep 16, 2024
@orbeckst
Merge pull request #395 from alchemistry/add-ciff
0c330cd 
* add CITATION.cff file
* close #394
* add all AUTHORS with ORCIDs and affiliation (as far as they are confirmed);   order based on AUTHORS
* add alchemlyb PIs
* add contributors that were listed in JOSS paper acknowledgements (PR #328) but had NOT been listed in AUTHORS (inserted in chronological order)
* only add emails for maintainers/PIs
* add Software Heritage Identifier
* add paper citation section for MBAR, decorrelation, and preliminary citation for JOSS paper #71 
* add one new contributor (from recent PR #381) to AUTHORS and CITATIONS.cff
@orbeckst orbeckst mentioned this issue Sep 18, 2024
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2 tasks
orbeckst added a commit that referenced this issue Sep 18, 2024
@orbeckst
make repo title identical to JOSS paper title
2bbebf3 
- close #402
- use same title in CITATION.cff for paper and project
  (required for the JOSS paper publication #71)
- added DOI for preferred citation in note because that is the
  only hint that shows up on zenodo)
@orbeckst orbeckst mentioned this issue Sep 18, 2024
Merged
orbeckst added a commit that referenced this issue Sep 19, 2024
@orbeckst
make repo title identical to JOSS paper title (#404)
9ec63db 
- close #402
- use same title in CITATION.cff for paper and project
  (required for the JOSS paper publication #71)
- added DOI for preferred citation in note because that is the
  only hint that shows up on zenodo)
jaclark5 pushed a commit to jaclark5/alchemlyb that referenced this issue Sep 19, 2024
@orbeckst @jaclark5
make repo title identical to JOSS paper title (alchemistry#404)
263a431 
- close alchemistry#402
- use same title in CITATION.cff for paper and project
  (required for the JOSS paper publication alchemistry#71)
- added DOI for preferred citation in note because that is the
  only hint that shows up on zenodo)
@orbeckst orbeckst mentioned this issue Sep 26, 2024
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@orbeckst
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The paper was published today openjournals/joss-reviews#6934 (comment) as https://doi.org/10.21105/joss.06934 .

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JOSS paper alchemistry/alchemlyb
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@orbeckst @mrshirts @davidlmobley @harlor