please update the tutorial

[Keep-Raining]

I ran run_cistarget function following your tutorial https://pycistarget.readthedocs.io/en/latest/pycistarget_scenic%2B_human_brain.html#1.-Deriving-cistromes-using-topics-with-cisTarget in the cell6 and this function has been removed from pycistopic.
Also I need to annotate motifs for my topic, what should I do instead of using run_cistarget()?

[sheyiphunmi]

I am also trying to use the function as specified in the tutorial: https://pycistarget.readthedocs.io/en/latest/pycistarget_chip-RTD.html, but I couldn't get it to work.

The error message is:

NameError: name 'run_cistarget' is not defined

[SeppeDeWinter]

Hi @Keep-Raining and @sheyiphunmi

Indeed this function does not exist anymore.
pycistarget is now a command line application.

See:

pycistarget cistarget --help

for more info.

Best,

Seppe