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Too many command-line arguments #22
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SOLVED: The problem was caused by the space within the name of external drive. By changing it the standard first command worked just fine. |
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Hi,
First of all, thanks for developing this tool, I'm looking forward to playing with it!
I installed the ParallelFold into a Ubuntu 18 machine, and the full alphafold database into an external drive.
When running the command:
$ ./run_alphafold.sh -d /media/qhr/"My Passport"/alphafold/AlphaFold_DB -o output -p monomer_ptm -i input/GA98.fasta -m model_1 -f
I get the Error: Too many command-line arguments.
Also get the same error by calling directly to run_alphafold.py:
$ python3 run_alphafold.py --fasta_paths=input/GA98.fasta --model_preset=monomer --data_dir=/media/qhr/"My Passport"/alphafold/AlphaFold_DB --output_dir=output --uniref90_database_path=/media/qhr/"My Passport"/alphafold/AlphaFold_DB/uniref90 --mgnify_database_path=/media/qhr/"My Passport"/alphafold/AlphaFold_DB/mgnify --template_mmcif_dir=/media/qhr/"My Passport"/alphafold/AlphaFold_DB/pdb_mmcif --obsolete_pdbs_path=/media/qhr/"My Passport"/alphafold/AlphaFold_DB/pdb_mmcif/obsolete.dat --use_gpu_relax=True bfd_database_path=/media/qhr/"My Passport"/alphafold/AlphaFold_DB/bfd --max_template_date=2020-05-14
Is it possible that the space in the name of the external drive "My Passport" is causing such error?
Thanks!
Ana
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