diff --git a/results/simulation/README.md b/results/simulation/README.md new file mode 100644 index 0000000..d197a94 --- /dev/null +++ b/results/simulation/README.md @@ -0,0 +1,24 @@ +# Simulation in XMAP paper +Here, we provide the codes for generating the simulation results in XMAP paper. +The file names are specified with their functionalities + specific simulation scenario in XMAP paper. + +## Simulation scenario +- Polygenic + causal effects from normal distributions: *_small_chr22.R +- Polygenic + causal effects from scaled t distributions: *_small_t_chr22.R +- Causal effects + counfounding (introduced by PC): *_inflated_small.R +- Causal effects only: *_small_nobg.R + +## Codes for generating simulation data +- Codes for generating effect sizes: Start with 'construct_effect_size' +- Codes for generating GWAS data: Start with 'construct_gwas' + +## Codes for running fine-mapping methods +- XMAP: Start with "simu_XMAP" +- SuSiEx: Start with "simu_susie" +- MsCAVIAR: Start with "simu_mscaviar" +- PAINTOR: Start with "simu_paintor" +- SuSiE-inf: Start with "simu_susieinf" +- SuSiE: Start with "simu_susie" +- FINEMAP: Start with "simu_fm" +- DAP-G: Start with "simu_dapg" +