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Cannot find CCFv3 dataset #33

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lightoorange opened this issue Jul 22, 2024 · 1 comment
Open

Cannot find CCFv3 dataset #33

lightoorange opened this issue Jul 22, 2024 · 1 comment

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@lightoorange
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Dear Professor,
I want to know where I can find this file when I try this great STitch3D.
#3D coordinates and model are based on CCFv3.
load("spotstable.RData")
load("VOLUMESMALL.RData")
load("VOLUME.RData")
in this part, "Run STitch3D on the adult mouse brain dataset"
I know this issue has been discussed in #14, but I am experiencing the same problem and am unsure how to modify the paths path.bin and path.matrices to the corresponding folders to obtain the data I need.

Thank you so much!

@gefeiwang
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Hi there,

path.bin refers to the path to the folder on your computer containing scripts in https://github.com/cantin-ortiz/molecular-atlas/tree/a409706716520a29471882c535b618a28d6a2b0c/bin. 'path.matrices' refers to the folder containing atlasspots.RData and vivid-colors.RData, which can be found in https://github.com/cantin-ortiz/molecular-atlas.

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