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running time about kBET #4

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yuxiaokang-source opened this issue Jan 9, 2023 · 1 comment
Open

running time about kBET #4

yuxiaokang-source opened this issue Jan 9, 2023 · 1 comment

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@yuxiaokang-source
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I have some doubt about the running time about the calculation of kBET, I have run the notebook on my own computer provided with https://htmlpreview.github.io/?https://github.com/jiazhao97/Portal-reproducibility/blob/main/Reproduce-Spleen.html. I found it is really time consumed(16min with TabulaMuris-Spleen) about kBET. I wonder the running time of kBET with large-scale dataset and how to speed up? Cound you give me some suggestions about this? thank you!
@jiazhao97
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Thank you for your interest! It will take some time to calculate kBET. To speed up, we recommend subsampling of the dataset.

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@jiazhao97 @yuxiaokang-source