CTAT-mutations v2.2.0

Consistent for hg19 and hg38, includes new version of IGV-reports and CRAVAT.

IGV-reports integrated

This version encompasses the igv reports repo which generates html report for visualization

CTAT-Mutations Release v.2.0.1

Removed pandas from mutation library prep.

CTAT Mutation Detection Pipeline - Release v2.0.0

• Upgraded to use GATK4 best practices
• Works with both Hg19 and Hg38 genome versions
• RNA editing filter resource - Rediportal added
• Options menu reorganized
• Python 2.7 and 3 compatible
• Mutation resource library set up added

CTAT Mutations Pipeline - Release v1.0

Mutation detection in RNA-Seq uses GATK-v4.0 in RNA-Seq variant calling, several sources of variant annotation, and filtering based on CRAVAT.