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environment.yml
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environment.yml
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name: medsam2
channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- asttokens=2.4.1=pyhd8ed1ab_0
- bzip2=1.0.8=h5eee18b_6
- ca-certificates=2024.7.4=hbcca054_0
- comm=0.2.2=pyhd8ed1ab_0
- debugpy=1.6.7=py312h6a678d5_0
- decorator=5.1.1=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h6a678d5_0
- importlib_metadata=8.2.0=hd8ed1ab_0
- ipykernel=6.29.5=pyh3099207_0
- ipython=8.26.0=pyh707e725_0
- jedi=0.19.1=pyhd8ed1ab_0
- jupyter_client=8.6.2=pyhd8ed1ab_0
- jupyter_core=5.7.2=py312h06a4308_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=1.41.5=h5eee18b_0
- matplotlib-inline=0.1.7=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- openssl=3.0.14=h5eee18b_0
- packaging=24.1=pyhd8ed1ab_0
- parso=0.8.4=pyhd8ed1ab_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pip=24.0=py312h06a4308_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- prompt-toolkit=3.0.47=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.3=pyhd8ed1ab_0
- pygments=2.18.0=pyhd8ed1ab_0
- python=3.12.4=h5148396_1
- pyzmq=25.1.2=py312h6a678d5_0
- readline=8.2=h5eee18b_0
- setuptools=69.5.1=py312h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.45.3=h5eee18b_0
- stack_data=0.6.2=pyhd8ed1ab_0
- tk=8.6.14=h39e8969_0
- tornado=6.4.1=py312h5eee18b_0
- traitlets=5.14.3=pyhd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- wheel=0.43.0=py312h06a4308_0
- xz=5.4.6=h5eee18b_1
- zeromq=4.3.5=h6a678d5_0
- zipp=3.19.2=pyhd8ed1ab_0
- zlib=1.2.13=h5eee18b_1
- pip:
- acvl-utils==0.2
- antlr4-python3-runtime==4.9.3
- anyio==4.4.0
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- argparse==1.4.0
- arrow==1.3.0
- async-lru==2.0.4
- asyncio-atexit==1.0.1
- attrs==23.2.0
- babel==2.15.0
- backoff==2.2.1
- batchgenerators==0.25
- batchgeneratorsv2==0.2
- beautifulsoup4==4.12.3
- bleach==6.1.0
- certifi==2024.7.4
- cffi==1.16.0
- charset-normalizer==3.3.2
- connected-components-3d==3.18.0
- contourpy==1.2.1
- cycler==0.12.1
- defusedxml==0.7.1
- deprecated==1.2.14
- dicom2nifti==2.4.11
- dynamic-network-architectures==0.3.1
- einops==0.8.0
- fastjsonschema==2.20.0
- fft-conv-pytorch==1.2.0
- filelock==3.15.4
- fonttools==4.53.1
- fqdn==1.5.1
- fsspec==2024.6.1
- future==1.0.0
- googleapis-common-protos==1.63.2
- h11==0.14.0
- httpcore==1.0.5
- httpx==0.27.0
- hydra-core==1.3.2
- idna==3.7
- imagecodecs==2024.6.1
- imageio==2.34.2
- importlib-metadata==6.11.0
- iopath==0.1.10
- ipympl==0.9.4
- ipython-genutils==0.2.0
- ipywidgets==8.1.3
- isoduration==20.11.0
- jinja2==3.1.4
- joblib==1.4.2
- json5==0.9.25
- jsonpointer==3.0.0
- jsonschema==4.23.0
- jsonschema-specifications==2023.12.1
- jupyter-events==0.10.0
- jupyter-lsp==2.2.5
- jupyter-server==2.14.2
- jupyter-server-terminals==0.5.3
- jupyterlab==4.2.4
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.27.3
- jupyterlab-widgets==3.0.11
- kiwisolver==1.4.5
- lazy-loader==0.4
- linecache2==1.0.0
- markupsafe==2.1.5
- matplotlib==3.9.1
- mistune==3.0.2
- monai==1.3.2
- mpmath==1.3.0
- nbclient==0.10.0
- nbconvert==7.16.4
- nbformat==5.10.4
- networkx==3.3
- nibabel==5.2.1
- nnunetv2==2.5.1
- notebook-shim==0.2.4
- numpy==2.0.1
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.5.82
- nvidia-nvtx-cu12==12.1.105
- omegaconf==2.3.0
- opencv-python==4.10.0.84
- opentelemetry-api==1.21.0
- opentelemetry-exporter-otlp-proto-common==1.21.0
- opentelemetry-exporter-otlp-proto-http==1.21.0
- opentelemetry-proto==1.21.0
- opentelemetry-sdk==1.21.0
- opentelemetry-semantic-conventions==0.42b0
- overrides==7.7.0
- pandas==2.2.2
- pandocfilters==1.5.1
- pillow==10.4.0
- portalocker==2.10.1
- prometheus-client==0.20.0
- protobuf==4.25.4
- psutil==5.9.8
- pycparser==2.22
- pydicom==2.4.4
- pyparsing==3.1.2
- python-dateutil==2.9.0.post0
- python-gdcm==3.0.24.1
- graphviz==0.20.3
- python-json-logger==2.0.7
- pytz==2024.1
- pyyaml==6.0.1
- referencing==0.35.1
- requests==2.32.3
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- rpds-py==0.19.1
- scikit-image==0.24.0
- scikit-learn==1.5.1
- scipy==1.14.0
- seaborn==0.13.2
- send2trash==1.8.3
- simpleitk==2.3.1
- sniffio==1.3.1
- soupsieve==2.5
- sympy==1.13.1
- synapseclient==4.4.0
- tensorboardx==2.6.2.2
- terminado==0.18.1
- threadpoolctl==3.5.0
- tifffile==2024.7.24
- tinycss2==1.3.0
- torch==2.4.0
- torchaudio==2.4.0
- torchsummary==1.5.1
- torchvision==0.19.0
- tqdm==4.66.4
- traceback2==1.4.0
- triton==3.0.0
- types-python-dateutil==2.9.0.20240316
- tzdata==2024.1
- unittest2==1.1.0
- uri-template==1.3.0
- urllib3==1.26.19
- webcolors==24.6.0
- webencodings==0.5.1
- websocket-client==1.8.0
- widgetsnbextension==4.0.11
- wrapt==1.16.0
- yacs==0.1.8