Information about the actual development goals and timelines.
- January 18, 2018: Meet and discuss general project strategy
- Feburary 2018: Can we reproduce CellRanger from the DAG or from the code? Start implementation.
- ...
- Keep the pipeline as general as possible so that every institute can use it out of the box.
- Why do we want to reimplement CellRanger in NF?!
- Nextflow allows performance monitoring
- More flexible code
- Easily exchangeable modules
- Better documentation
- Better fine tuning of cluster ressources with respect to the different pipeline steps
- Anastasios has a lot of experience with CellRanger
- It may be hard to run CellRanger on the cluster efficiently
TODO
Simon: Take a look at the CellRanger Code and compare to the DAG KEY QUESTION: Do we stick to the CODE or to the DAG?!
Once we know, what is easier to follow for the pipeline reproduction, we start.