Releases: Russel88/DAtest
New version
Added the mvabund method (manyglm with negative binomial). Not included by default
Added warnings for small datasets, or if too many features are spiked
Now also spiking 6% of features (instead of 3%) in powerDA as in testDA
Set the minimum number of spike-ins to 15 features when k = NULL
New version
q-value thresholds changed to 0.1 instead of 0.05.
Linear regression not included in two-class scenarios anymore.
Non-transformed linear/limma regression not included when relative is TRUE.
effectSize default changed from 4 to 5.
6% features are now spiked instead of 3% in testDA.
Spike detect rate is now also plotted (plot.DA), and methods are ordered by an average ranking of AUC and Spike.detect.rate, with all the high FPR methods highlighted in the end.
A similar ranking as with the plotting is now also printed (summary.DA) and the methods are ordered by this ranking.
biorXiv version
v2.7.5 Update zig paired
New version
v2.7.4 Added new DESeq2 and change adx p.adj
New version
v2.7.3 New version
New version
v2.7.2 Update zzz.R
New version
v2.7.1 New version
New version
v2.7.0 2.7.0 New version
v2.6.7
New version
v2.6.6 New version