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DESCRIPTION
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DESCRIPTION
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Package: GEAnaly
Type: Package
Title: Analyze gene expression matrix data within a well-constructed pipeline,
in a single command
Version: 0.1.0
Authors@R: person("Gen", "Li",
email = "[email protected]",
role = c("aut", "cre"))
Maintainer: Gen Li <[email protected]>
Description: GEAnaly is an R package that implements a pipeline,
which integrates gene differential expression analysis,
gene enrichment analysis and gene correlation analysis,
for the analysis of gene expression matrix data and visualization of
the results of each analysis in the pipeline. The whole analysis pipeine
can be executed in a single command efficiently.
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.3.0)
biocViews: Software, AssayDomain
Imports:
DESeq2,
dplyr,
ggplot2,
ggplotify,
gprofiler2,
grDevices,
htmlwidgets,
pheatmap,
shiny,
stats,
utils
License: MIT + file LICENSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/ReaganGen/GEAnaly
BugReports: https://github.com/ReaganGen/GEAnaly/issues