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NEWS.md

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1.5.3

Transition to use SingleCellExperiment and manage log counts slot.

Version 1.7.3

  • Fixed a bug were weighted residuals weren't being returned, causing the residuals hook to fail.
  • Fixed documentation and vignettes.
  • Added CovFromBoots() API to return inter-gene covariance matrices for model coefficients from GSEA bootstraps.
  • Added some files and directories to .Rbuildignore to address notes and warnings.

1.11.2

  • Deprecated functions in version 1.8.0 are now Defunct. filter (defunct since 1.8.0) has been removed. Use mast_filter now.
  • Refactored the FromMatrix constructor so that list-like assays don't make a roundtrip through an array. This allows sparse-matrix and HDF5-backed assays to be provided to the constructor.
  • zlm gains an exprs_value argument to allow the assay to be selected that will be tested.

1.25.1

  • Fixed an issue in stat_ell
  • Warn rather than error out if zlm is called with bad dot args (satijalab/seurat#6489)