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Metazoa_S1.cm
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INFERNAL1/a [1.1.2 | July 2016]
NAME S1.seed25-1
STATES 215
NODES 57
CLEN 67
W 104
ALPH RNA
RF no
CONS yes
MAP no
DATE Fri Jun 5 15:46:47 2009
COM [1] cmbuild S1/S1.seed25.cm S1/S1.seed25.stk
COM [2] cmcalibrate --mpi -s 1244209705 S1/S1.seed25.cm
COM [3] cmconvert -o ./annotation/tm/Metazoa_S1.cm ./annotation/models/Metazoa_S1.cm
PBEGIN 0.05
PEND 0.05
WBETA 1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA 0.03125
N3OMEGA 0.03125
ELSELF -0.08926734
NSEQ 36
EFFN 20.403999
NULL 0.000 0.000 0.000 0.000
EFP7GF -6.5027 0.73980
ECMLC 0.70139 -5.74796 2.68313 1500000 416226 0.002703
ECMGC 0.39360 -15.27795 -2.83266 1500000 50279 0.007458
ECMLI 0.61148 -4.87320 4.41836 1500000 330082 0.003408
ECMGI 0.38943 -12.46843 -0.02763 1500000 47658 0.007869
CM
[ ROOT 0 ] - - - - - -
S 0 -1 0 1 4 0 1 104 153 -9.405 -10.651 -0.014 -7.104
IL 1 1 2 1 4 3 24 106 154 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000
IR 2 2 3 2 3 3 26 106 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
[ MATR 1 ] - - - u - -
MR 3 2 3 5 5 5 29 105 153 -9.486 -0.007 -9.302 -9.514 -10.405 0.286 -1.112 -0.679 0.760
D 4 2 3 5 5 1 21 103 151 -5.352 -0.707 -2.978 -4.409 -2.404
IR 5 5 3 5 5 3 24 105 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 2 ] - - g c - -
MP 6 5 3 10 6 5 29 104 152 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.671 -3.668 -5.627 2.351 -6.458 -5.470 -0.835 -5.135 -4.790 2.854 -4.481 -0.304 0.156 -4.830 -2.409 -0.558
ML 7 5 3 10 6 2 22 102 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 8 5 3 10 6 2 22 101 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 9 5 3 10 6 0 18 98 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 10 10 5 10 6 2 24 103 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 11 11 6 11 5 3 24 103 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 3 ] - - A U - -
MP 12 11 6 16 6 5 28 102 150 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.551 -3.618 -5.362 3.186 -5.904 -5.316 -1.141 -4.611 -4.847 2.206 -4.943 -0.954 -0.384 -4.905 -2.707 -3.920
ML 13 11 6 16 6 2 22 100 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 14 11 6 16 6 2 22 99 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 15 11 6 16 6 0 18 96 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 16 16 5 16 6 2 23 101 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 17 17 6 17 5 2 23 101 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 4 ] - - a u - -
MP 18 17 6 22 6 5 27 100 148 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.615 -3.625 -5.546 2.764 -6.334 -5.407 -0.864 -5.006 -4.763 2.481 -2.148 0.105 -0.154 -4.805 -0.928 -3.970
ML 19 17 6 22 6 2 22 98 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 20 17 6 22 6 2 21 97 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 21 17 6 22 6 0 17 94 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 22 22 5 22 6 2 23 99 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 23 23 6 23 5 2 23 99 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 5 ] - - a u - -
MP 24 23 6 28 6 5 25 98 146 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -0.984 -3.598 -5.456 2.681 -6.139 -5.345 -0.885 -4.905 -4.728 2.471 -4.520 -0.708 0.652 -1.707 -2.444 -3.928
ML 25 23 6 28 6 2 21 96 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 26 23 6 28 6 2 21 95 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 27 23 6 28 6 0 17 92 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 28 28 5 28 6 2 22 97 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 29 29 6 29 5 2 22 97 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 6 ] - - a u - -
MP 30 29 6 34 6 5 23 96 144 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.894 -3.908 -5.799 2.784 -6.284 -5.694 -0.167 -5.245 -5.053 2.400 -4.803 -1.482 0.903 -5.095 -1.358 -4.198
ML 31 29 6 34 6 2 20 94 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 32 29 6 34 6 2 20 94 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 33 29 6 34 6 0 17 91 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 34 34 5 34 6 2 21 95 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 35 35 6 35 5 2 21 95 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 7 ] - - a u - -
MP 36 35 6 40 6 5 21 94 142 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -5.051 -4.060 -5.951 2.701 -6.323 -5.857 0.011 -5.414 -5.198 2.362 -4.922 -1.574 1.336 -5.239 -2.377 -4.324
ML 37 35 6 40 6 2 19 92 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 38 35 6 40 6 2 19 92 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 39 35 6 40 6 0 16 90 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 40 40 5 40 6 2 20 93 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 41 41 6 41 5 2 20 93 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 8 ] - - a u - -
MP 42 41 6 46 4 4 19 92 140 -9.591 -9.798 -0.008 -8.212 -2.792 -2.582 -2.940 1.959 -2.796 -3.147 0.152 -2.789 -1.403 1.910 -1.234 -1.129 1.507 -0.308 -0.037 -0.962
ML 43 41 6 46 4 1 18 91 139 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 44 41 6 46 4 1 17 90 138 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 45 41 6 46 4 0 16 89 137 -4.568 -4.250 -2.265 -0.520
IL 46 46 5 46 4 2 19 92 140 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 47 47 6 47 3 2 19 91 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 9 ] - - a - - -
ML 48 47 6 50 3 2 17 90 138 -10.518 -0.003 -9.172 0.546 -1.393 -0.197 0.364
D 49 47 6 50 3 0 16 88 136 -6.174 -1.687 -0.566
IL 50 50 3 50 3 2 18 90 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 10 ] - - u - - -
ML 51 50 3 53 2 1 16 89 137 -11.133 -0.001 0.347 -0.435 -0.949 0.556
D 52 50 3 53 2 0 15 88 136 -8.445 -0.004
IL 53 53 3 53 2 1 17 89 137 -1.823 -0.479 0.000 0.000 0.000 0.000
[ BIF 11 ] - - - - - -
B 54 53 3 127 55 0 15 88 136
[ BEGR 37 ] - - - - - -
S 55 54 1 56 3 0 0 60 108 -2.603 -0.262 -9.172
IL 56 56 2 56 3 1 1 65 113 -0.552 -1.682 -7.315 0.000 0.000 0.000 0.000
[ MATL 38 ] - - u - - -
ML 57 56 2 59 3 1 1 35 53 -10.518 -0.003 -9.172 0.215 -1.504 -0.096 0.633
D 58 56 2 59 3 0 0 35 53 -6.174 -1.687 -0.566
IL 59 59 3 59 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 39 ] - - U - - -
ML 60 59 3 62 3 1 1 34 52 -10.518 -0.003 -9.172 0.343 -1.201 -2.822 1.108
D 61 59 3 62 3 0 0 33 52 -6.174 -1.687 -0.566
IL 62 62 3 62 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 40 ] - - a - - -
ML 63 62 3 65 3 1 1 33 51 -10.518 -0.003 -9.172 0.678 -0.994 -1.502 0.627
D 64 62 3 65 3 0 0 32 51 -6.174 -1.687 -0.566
IL 65 65 3 65 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 41 ] - - u - - -
ML 66 65 3 68 5 1 1 31 50 -9.486 -0.007 -9.302 -9.514 -10.405 -0.232 0.139 -1.140 0.672
D 67 65 3 68 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508
IL 68 68 3 68 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 42 ] - - c g - -
MP 69 68 3 73 6 2 2 30 49 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.756 -4.052 -5.375 1.834 -4.728 -5.527 2.184 -5.093 -4.980 2.165 -4.742 -0.626 0.902 -4.848 -1.935 -1.666
ML 70 68 3 73 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 71 68 3 73 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 72 68 3 73 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 73 73 5 73 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 74 74 6 74 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 43 ] - - u a - -
MP 75 74 6 79 6 2 2 28 47 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.391 -4.425 -4.592 1.566 -3.277 -1.813 1.948 -4.585 -4.806 1.388 -4.739 -0.919 2.185 -4.366 -0.526 -3.245
ML 76 74 6 79 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 77 74 6 79 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 78 74 6 79 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 79 79 5 79 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 80 80 6 80 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 44 ] - - g c - -
MP 81 80 6 85 6 2 2 26 45 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.717 -3.736 -5.638 1.967 -6.296 -5.510 0.329 -5.164 -4.840 2.183 -4.539 2.108 0.238 -4.868 -2.378 -1.715
ML 82 80 6 85 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 83 80 6 85 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 84 80 6 85 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 85 85 5 85 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 86 86 6 86 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 45 ] - - u a - -
MP 87 86 6 91 6 2 2 24 43 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.569 -4.643 -4.754 1.395 -3.396 -5.300 2.137 -4.747 -5.002 1.483 -4.943 -1.823 2.246 -4.550 -1.286 -1.482
ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 89 86 6 91 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 90 86 6 91 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 91 91 5 91 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 92 92 6 92 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 46 ] - - G C - -
MP 93 92 6 97 4 2 2 22 41 -9.591 -4.317 -0.798 -1.421 -4.714 -1.081 -5.671 2.291 -6.500 -5.469 -0.870 -5.179 -4.816 3.008 -4.503 -1.282 0.205 -4.845 -2.444 -4.058
ML 94 92 6 97 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 95 92 6 97 4 1 1 23 40 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 96 92 6 97 4 0 0 22 39 -4.568 -4.250 -2.265 -0.520
IL 97 97 5 97 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 98 98 6 98 3 1 1 22 40 -2.173 -0.774 -2.370 0.000 0.000 0.000 0.000
[ MATL 47 ] - - G - - -
ML 99 98 6 101 3 1 1 20 39 -9.817 -0.079 -4.253 -1.331 -3.959 1.778 -3.202
D 100 98 6 101 3 0 0 19 37 -10.627 -1.000 -1.002
IL 101 101 3 101 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 48 ] - - U - - -
ML 102 101 3 104 3 1 1 19 38 -10.160 -0.004 -8.814 -1.548 -2.229 -2.797 1.723
D 103 101 3 104 3 0 0 18 36 -9.865 -2.029 -0.408
IL 104 104 3 104 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 49 ] - - U - - -
ML 105 104 3 107 3 1 1 18 37 -10.254 -0.004 -8.909 -2.630 -2.746 -4.356 1.864
D 106 104 3 107 3 0 0 17 35 -9.505 -5.018 -0.047
IL 107 107 3 107 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 50 ] - - u - - -
ML 108 107 3 110 3 1 1 17 35 -10.254 -0.004 -8.909 0.187 -0.011 -2.549 0.764
D 109 107 3 110 3 0 0 16 34 -9.505 -1.866 -0.465
IL 110 110 3 110 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 51 ] - - A - - -
ML 111 110 3 113 3 1 1 16 34 -10.331 -0.004 -8.985 1.599 -3.038 -0.738 -2.005
D 112 110 3 113 3 0 0 15 33 -9.102 -1.964 -0.431
IL 113 113 3 113 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 52 ] - - A - - -
ML 114 113 3 116 3 1 1 14 33 -10.379 -0.004 -9.033 1.559 -2.936 -1.989 -0.575
D 115 113 3 116 3 0 0 14 32 -8.752 -1.602 -0.581
IL 116 116 3 116 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 53 ] - - a - - -
ML 117 116 3 119 3 1 1 13 31 -10.427 -0.055 -4.771 0.563 -0.042 -2.688 0.482
D 118 116 3 119 3 0 0 13 31 -8.284 -0.251 -2.675
IL 119 119 3 119 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 54 ] - - U - - -
ML 120 119 3 122 3 1 1 11 30 -10.470 -0.277 -2.525 -0.295 -0.709 -2.065 1.223
D 121 119 3 122 3 0 0 12 31 -7.645 -3.158 -0.180
IL 122 122 3 122 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 55 ] - - C - - -
ML 123 122 3 125 2 1 1 1 1 * 0.000 -1.444 1.408 -3.092 -0.214
D 124 122 3 125 2 0 0 0 0 * 0.000
IL 125 125 3 125 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 56 ] - - - - - -
E 126 125 3 -1 0 0 0 0 0
[ BEGL 12 ] - - - - - -
S 127 54 1 128 1 0 1 50 79 0.000
[ BIF 13 ] - - - - - -
B 128 127 1 129 158 0 1 50 79
[ BEGL 14 ] - - - - - -
S 129 128 1 130 4 0 0 32 61 -0.707 -8.701 -8.109 -1.391
[ MATP 15 ] - - u a - -
MP 130 129 1 134 6 2 2 33 61 -10.076 -10.015 -0.011 -8.792 -9.072 -9.467 -0.322 -0.373 0.136 0.554 -0.448 -0.690 -0.118 0.189 -0.383 0.727 -1.740 -0.431 1.544 -0.480 -0.104 -1.252
ML 131 129 1 134 6 1 1 31 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 132 129 1 134 6 1 1 31 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 133 129 1 134 6 0 0 27 55 -13.273 -11.971 -7.769 -8.451 -8.468 -0.015
IL 134 134 5 134 6 1 1 33 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 135 135 6 135 5 1 1 32 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 16 ] - - u a - -
MP 136 135 6 140 6 2 2 31 59 -10.076 -10.015 -0.011 -8.792 -9.072 -9.467 0.403 -1.440 0.130 0.419 0.139 -1.809 0.512 -1.453 0.470 0.682 -1.804 0.257 1.452 -1.258 -0.577 -1.303
ML 137 135 6 140 6 1 1 29 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 138 135 6 140 6 1 1 29 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 139 135 6 140 6 0 0 27 55 -13.273 -11.971 -7.769 -8.451 -8.468 -0.015
IL 140 140 5 140 6 1 1 31 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 141 141 6 141 5 1 1 30 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 17 ] - - u a - -
MP 142 141 6 146 4 2 2 29 57 -0.493 -8.966 -2.035 -4.525 0.596 -0.316 -1.525 0.471 -1.413 -1.748 -0.120 -1.394 0.842 0.872 -0.535 -0.436 1.120 0.281 -0.554 -0.224
ML 143 141 6 146 4 1 1 25 53 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 144 141 6 146 4 1 1 24 52 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 145 141 6 146 4 0 0 27 55 -0.768 -8.382 -1.788 -3.056
IL 146 146 5 146 4 1 1 28 56 -0.943 -7.676 -1.316 -3.770 0.000 0.000 0.000 0.000
IR 147 147 6 147 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 18 ] - - a - - -
ML 148 147 6 150 3 1 1 13 31 -10.264 -0.004 -8.918 0.967 -1.398 -0.758 0.103
D 149 147 6 150 3 0 0 12 31 -9.461 -1.111 -0.901
IL 150 150 3 150 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 19 ] - - A - - -
ML 151 150 3 153 3 1 1 11 30 -10.392 -0.930 -1.075 1.103 -1.139 -1.631 0.105
D 152 150 3 153 3 0 0 12 30 -8.647 -0.191 -3.038
IL 153 153 3 153 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 20 ] - - u - - -
ML 154 153 3 156 2 1 1 1 1 * 0.000 0.064 -0.657 -0.455 0.670
D 155 153 3 156 2 0 0 0 0 * 0.000
IL 156 156 3 156 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 21 ] - - - - - -
E 157 156 3 -1 0 0 0 0 0
[ BEGR 22 ] - - - - - -
S 158 128 1 159 3 0 0 30 49 -10.518 -0.003 -9.172
IL 159 159 2 159 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 23 ] - - a - - -
ML 160 159 2 162 5 1 1 30 49 -9.486 -0.007 -9.302 -9.514 -10.405 0.712 -0.301 -0.862 0.001
D 161 159 2 162 5 0 0 29 47 -4.959 -0.803 -4.221 -2.596 -2.508
IL 162 162 3 162 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 24 ] - - u a - -
MP 163 162 3 167 6 2 2 29 48 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.641 -1.850 -4.840 2.092 -3.466 -5.425 1.719 -4.850 -5.095 0.122 -5.099 -1.969 2.531 -4.656 -0.656 -3.499
ML 164 162 3 167 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 165 162 3 167 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 166 162 3 167 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 167 167 5 167 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 168 168 6 168 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 25 ] - - a u - -
MP 169 168 6 173 6 2 2 27 46 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.191 0.348 -4.813 2.647 -5.013 -4.846 -0.140 -4.356 -4.400 1.542 -4.356 0.646 1.003 -4.311 -1.090 -1.964
ML 170 168 6 173 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 171 168 6 173 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 172 168 6 173 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 173 173 5 173 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 174 174 6 174 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 26 ] - - a u - -
MP 175 174 6 179 6 2 2 25 44 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.484 -3.583 -5.314 2.628 -1.592 -5.254 -0.857 -4.788 -4.674 2.284 -4.519 0.584 0.801 -4.683 -2.419 -1.742
ML 176 174 6 179 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 177 174 6 179 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 178 174 6 179 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 179 179 5 179 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 180 180 6 180 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 27 ] - - g c - -
MP 181 180 6 185 6 2 2 23 42 -10.693 -10.633 -0.007 -9.409 -9.689 -10.084 -4.667 -3.672 -5.615 2.341 -6.407 -5.467 -0.829 -5.124 -4.789 2.460 -4.486 1.088 0.868 -4.828 -2.406 -1.277
ML 182 180 6 185 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 183 180 6 185 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 184 180 6 185 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 185 185 5 185 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 186 186 6 186 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 28 ] - - g c - -
MP 187 186 6 191 4 2 2 21 39 -9.591 -9.798 -0.008 -8.212 -1.529 -1.090 -5.609 2.030 -6.426 -5.455 -0.134 -5.125 -4.775 2.953 -4.465 -1.247 0.653 -4.812 -2.403 -4.008
ML 188 186 6 191 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 189 186 6 191 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 190 186 6 191 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
IL 191 191 5 191 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 192 192 6 192 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 29 ] - - C - - -
ML 193 192 6 195 3 1 1 18 37 -10.518 -0.003 -9.172 -3.917 1.872 -4.941 -2.056
D 194 192 6 195 3 0 0 19 37 -6.174 -1.687 -0.566
IL 195 195 3 195 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 30 ] - - U - - -
ML 196 195 3 198 3 1 1 17 35 -10.518 -0.003 -9.172 -4.299 -4.000 -5.006 1.947
D 197 195 3 198 3 0 0 18 36 -6.174 -1.687 -0.566
IL 198 198 3 198 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 31 ] - - G - - -
ML 199 198 3 201 3 1 1 16 34 -10.518 -0.003 -9.172 -3.031 -4.353 1.616 -0.391
D 200 198 3 201 3 0 0 17 35 -6.174 -1.687 -0.566
IL 201 201 3 201 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 32 ] - - C - - -
ML 202 201 3 204 3 1 1 14 33 -10.518 -0.003 -9.172 -4.395 1.951 -5.316 -4.008
D 203 201 3 204 3 0 0 16 34 -6.174 -1.687 -0.566
IL 204 204 3 204 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 33 ] - - U - - -
ML 205 204 3 207 3 1 1 13 31 -10.518 -0.003 -9.172 -4.299 -4.000 -5.006 1.947
D 206 204 3 207 3 0 0 15 33 -6.174 -1.687 -0.566
IL 207 207 3 207 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 34 ] - - A - - -
ML 208 207 3 210 3 1 1 11 30 -10.518 -0.003 -9.172 1.969 -5.498 -5.111 -4.899
D 209 207 3 210 3 0 0 13 32 -6.174 -1.687 -0.566
IL 210 210 3 210 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 35 ] - - A - - -
ML 211 210 3 213 2 1 1 1 1 * 0.000 1.969 -5.498 -5.111 -4.899
D 212 210 3 213 2 0 0 0 0 * 0.000
IL 213 213 3 213 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 36 ] - - - - - -
E 214 213 3 -1 0 0 0 0 0
//
HMMER3/f [3.1b3 | July 2016]
NAME S1.seed25-1
LENG 67
MAXL 104
ALPH RNA
RF no
MM no
CONS yes
CS yes
MAP no
DATE Sun Jan 19 18:59:15 2020
COM [1] cmbuild S1/S1.seed25.cm S1/S1.seed25.stk
COM [2] cmcalibrate --mpi -s 1244209705 S1/S1.seed25.cm
NSEQ 36
EFFN 20.403999
STATS LOCAL MSV -9.1299 0.73980
STATS LOCAL VITERBI -9.5780 0.73980
STATS LOCAL FORWARD -3.1032 0.73980
HMM A C G U
m->m m->i m->d i->m i->i d->m d->d
COMPO 1.26724 1.58915 1.61022 1.15693
1.38629 1.38629 1.38629 1.38629
0.00547 6.51876 5.52668 0.15983 1.91250 0.00000 *
1 1.11579 3.23766 0.67973 2.06881 - g - - (
1.38629 1.38629 1.38629 1.38629
0.00303 7.35972 6.03634 0.19915 1.71161 1.41653 0.27780
2 0.54909 3.38457 1.12564 2.74594 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00306 7.35219 6.02454 0.19915 1.71161 1.42014 0.27665
3 0.83597 3.24574 0.83958 2.34636 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00309 7.34737 6.01701 0.19915 1.71161 1.43390 0.27230
4 0.82376 3.25009 0.94373 2.01533 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00310 7.34408 6.01188 0.19915 1.71161 1.44823 0.26786
5 0.82624 2.81863 1.03332 1.91869 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00311 7.34170 6.00818 0.19915 1.71161 1.46092 0.26399
6 0.88434 2.70826 1.06262 1.74403 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00312 7.33991 6.00539 0.19915 1.71161 1.47156 0.26080
7 1.30535 2.35597 1.16065 1.13682 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00564 6.46143 5.50731 0.39722 1.11531 1.16457 0.37405
8 1.00788 2.35189 1.52288 1.13403 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
9 1.14572 1.68776 2.04404 1.00085 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.48650 7.71656 0.95508 0.49499 0.94052 0.48606 0.95463
10 1.35004 1.54551 1.53063 1.16742 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00464 6.93377 5.61067 0.19915 1.71161 4.51123 0.01105
11 1.35297 1.61750 1.27670 1.33113 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00483 6.90609 5.56709 0.19915 1.71161 4.44912 0.01176
12 1.37022 2.09020 1.15537 1.17978 - g - - <
1.38629 1.38629 1.38629 1.38629
1.38795 0.34824 3.11269 0.82455 0.57703 0.35855 1.19961
13 0.71591 2.35520 1.91159 1.31479 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00288 7.11457 6.18160 0.49466 0.94104 0.76857 0.62301
14 0.62186 2.17590 2.51693 1.31362 - a - - _
1.38629 1.38629 1.38629 1.38629
0.64490 7.20346 0.74541 0.49466 0.94104 0.13014 2.10353
15 1.34197 1.84173 1.70171 0.92192 - u - - _
1.38629 1.38629 1.38629 1.38629
0.49538 4.66634 0.96429 0.66178 0.72554 0.47009 0.98069
16 1.00502 1.35326 1.80038 1.55908 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00862 6.56240 4.93770 0.24405 1.52994 4.95512 0.00707
17 0.89425 1.78828 1.52686 1.57687 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00767 6.59517 5.07185 0.24077 1.54187 4.98522 0.00686
18 1.11963 1.44884 1.59386 1.44554 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 0.00174 6.35720
19 0.89293 1.59509 1.98395 1.38576 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00351 6.57544 6.16356 0.21943 1.62445 0.43461 1.04275
20 1.24250 1.53745 2.43229 0.89508 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00296 7.37541 6.06110 0.19915 1.71161 1.28576 0.32357
21 0.74151 2.74699 1.25329 1.74915 - a - - <
1.38629 1.38629 1.38629 1.38629
0.00302 7.36116 6.03860 0.19915 1.71161 1.35058 0.29988
22 0.92654 2.82274 0.90966 1.95211 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00306 7.35287 6.02559 0.19915 1.71161 1.39090 0.28615
23 1.12240 3.23098 0.73215 1.87009 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00308 7.34770 6.01752 0.19915 1.71161 1.41954 0.27684
24 1.17823 2.79294 0.66489 2.14898 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00557 6.47530 5.51903 0.39722 1.11531 1.14908 0.38116
25 4.10126 0.08863 4.81104 2.81131 - C - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
26 4.36617 4.15892 4.85622 0.03677 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
27 3.48700 4.40334 0.26595 1.65709 - g - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
28 4.43298 0.03427 5.07137 4.16473 - C - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
29 4.36617 4.15892 4.85622 0.03677 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
30 0.02137 5.19710 4.92886 4.78191 - A - - _
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
31 0.02137 5.19710 4.92886 4.78191 - A - - _
1.38629 1.38629 1.38629 1.38629
0.00909 6.08549 4.99451 0.57298 0.82975 0.06616 2.74864
32 2.08898 0.66203 2.61317 1.24800 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00268 7.12655 6.27808 0.22258 1.61170 1.04452 0.43365
33 2.11733 1.04468 2.96621 0.74162 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00245 7.14140 6.40172 0.22100 1.61807 0.94040 0.49507
34 1.99822 1.16073 2.97771 0.69264 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00213 7.16263 6.60252 0.21881 1.62696 0.79220 0.60303
35 2.00868 1.32205 2.39029 0.67798 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00167 7.19477 6.99704 0.21558 1.64028 0.56108 0.84535
36 0.99090 2.41456 1.38896 1.23782 - a - - >
1.38629 1.38629 1.38629 1.38629
0.18186 1.80452 6.35781 1.15958 0.37632 0.00208 6.17802
37 1.23719 2.42871 1.45276 0.94745 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
38 1.14861 2.21883 3.34242 0.61835 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
39 0.91619 2.07514 2.42726 0.95155 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00242 7.29086 6.35788 0.49466 0.94104 1.15530 0.37828
40 1.54701 1.28986 2.17639 0.92041 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00351 6.57544 6.16356 0.21943 1.62445 0.43461 1.04275
41 1.46653 1.24036 1.12442 1.86334 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00298 7.37149 6.05489 0.19915 1.71161 1.31579 0.31233
42 1.63952 1.31780 1.60336 1.08772 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00304 7.35834 6.03418 0.19915 1.71161 1.36978 0.29325
43 1.37408 2.49307 0.58523 2.23218 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00307 7.35076 6.02229 0.19915 1.71161 1.40571 0.28129
44 1.75715 1.25760 1.62779 1.05911 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00309 7.34606 6.01497 0.19915 1.71161 1.43131 0.27312
45 1.08108 3.25823 0.63046 2.40831 - g - - <
1.38629 1.38629 1.38629 1.38629
0.48892 6.47200 0.95408 0.41371 1.08233 1.18460 0.36509
46 2.30886 4.13046 0.15387 3.60574 - g - - _
1.38629 1.38629 1.38629 1.38629
0.05503 6.80489 2.94822 0.49466 0.94104 0.69245 0.69384
47 2.45939 2.93142 3.32513 0.19210 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00310 7.04270 6.10973 0.49466 0.94104 1.40509 0.28150
48 3.20917 3.28958 4.40554 0.09417 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10766 6.17538 0.49466 0.94104 3.47702 0.03139
49 1.25664 1.39389 3.15309 0.85670 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10766 6.17538 0.49466 0.94104 1.29222 0.32112
50 0.27790 3.49202 1.89778 2.77600 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00275 7.16088 6.22791 0.49466 0.94104 1.35940 0.29681
51 0.30577 3.42147 2.76506 1.78495 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00266 7.19407 6.26109 0.49466 0.94104 1.10834 0.40064
52 0.99618 1.41553 3.24960 1.05232 - a - - _
1.38629 1.38629 1.38629 1.38629
0.03807 7.22739 3.30695 0.49466 0.94104 0.17087 1.85106
53 1.59080 1.87777 2.81767 0.53861 - u - - _
1.38629 1.38629 1.38629 1.38629
0.19175 7.25700 1.74995 0.49466 0.94104 2.18368 0.11949
54 2.38736 0.41051 3.52967 1.53479 - c - - _
1.38629 1.38629 1.38629 1.38629
0.06015 2.97785 4.89641 0.25333 1.49706 0.00796 4.83727
55 2.54595 0.62607 2.99207 1.08847 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00278 7.11930 6.22991 0.22325 1.60903 1.09153 0.40902
56 1.18007 1.70710 1.18896 1.57593 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00257 7.13147 6.33585 0.22181 1.61480 1.00221 0.45739
57 2.52578 1.23238 2.35607 0.62808 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00228 7.14844 6.50538 0.21980 1.62292 0.87651 0.53825
58 1.21690 1.67534 1.24040 1.48131 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00185 7.17348 6.82539 0.21682 1.63513 0.68520 0.70115
59 2.08703 1.24730 1.19092 1.25624 - g - - >
1.38629 1.38629 1.38629 1.38629
0.01113 6.02015 4.75109 0.59237 0.80523 0.00870 4.74866
60 1.51441 1.19606 1.80043 1.16331 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00311 7.10132 6.08450 0.22550 1.60005 1.22800 0.34655
61 1.81426 1.11715 2.54441 0.84093 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00300 7.10816 6.13000 0.22477 1.60294 1.18361 0.36553
62 2.09911 1.08921 2.47919 0.78276 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00287 7.11715 6.18955 0.22387 1.60652 1.12727 0.39144
63 2.01098 0.98982 2.99661 0.81071 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00270 7.12937 6.27022 0.22274 1.61104 1.05472 0.42815
64 2.76829 1.02945 2.48902 0.69910 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00248 7.14667 6.38550 0.22129 1.61689 0.95922 0.48319
65 2.90746 1.21485 3.17339 0.49961 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00218 7.17244 6.56531 0.21933 1.62482 0.82871 0.57379
66 2.58170 0.77689 2.97305 0.88340 - c - - )
1.38629 1.38629 1.38629 1.38629
0.00654 6.50777 5.29218 0.23371 1.56824 0.71329 0.67340
67 1.18805 2.15707 1.85694 0.85950 - u - - :
1.38629 1.38629 1.38629 1.38629
* 0.00000 * 0.30554 1.33456 0.00000 *
//