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Metazoa_I.cm
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INFERNAL1/a [1.1.2 | July 2016]
NAME I.seed25-1
STATES 212
NODES 55
CLEN 66
W 98
ALPH RNA
RF no
CONS yes
MAP no
DATE Thu Jun 4 16:44:20 2009
COM [1] cmbuild I/I.seed25.cm I/I.seed25.stk
COM [2] cmcalibrate -s 1244126671 I/I.seed25.cm
COM [3] cmconvert -o ./annotation/tm/Metazoa_I.cm ./annotation/models/Metazoa_I.cm
PBEGIN 0.05
PEND 0.05
WBETA 1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA 0.03125
N3OMEGA 0.03125
ELSELF -0.08926734
NSEQ 37
EFFN 9.876000
NULL 0.000 0.000 0.000 0.000
EFP7GF -4.3722 0.74628
ECMLC 0.80028 -4.20039 2.83386 1500000 313292 0.003591
ECMGC 0.41060 -13.80369 -1.59498 1500000 56376 0.006652
ECMLI 0.69577 -3.41236 4.39062 1500000 256423 0.004387
ECMGI 0.47616 -8.82133 1.46852 1500000 50340 0.007449
CM
[ ROOT 0 ] - - - - - -
S 0 -1 0 1 4 0 1 98 132 -8.484 -9.729 -0.026 -6.183
IL 1 1 2 1 4 2 25 99 133 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000
IR 2 2 3 2 3 2 26 99 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
[ MATR 1 ] - - - a - -
MR 3 2 3 5 5 3 29 98 132 -8.594 -0.014 -8.409 -8.621 -9.513 0.845 -1.243 -1.096 0.393
D 4 2 3 5 5 0 20 96 131 -5.352 -0.707 -2.978 -4.409 -2.404
IR 5 5 3 5 5 2 24 98 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 2 ] - - A U - -
MP 6 5 3 10 6 4 29 97 131 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -3.972 -3.064 -4.756 3.153 -5.204 -4.726 0.026 -3.985 -4.307 1.782 -4.492 -0.060 -0.200 -4.359 -2.148 -3.346
ML 7 5 3 10 6 1 22 95 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 8 5 3 10 6 1 22 95 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 9 5 3 10 6 0 18 92 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 10 10 5 10 6 1 24 96 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 11 11 6 11 5 2 24 96 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 3 ] - - g c - -
MP 12 11 6 16 6 4 28 95 129 -5.885 -9.943 -0.035 -8.719 -8.999 -9.394 -4.247 -3.296 -5.115 2.089 -5.385 -5.033 0.510 -4.660 -4.386 2.578 -4.093 0.030 1.327 -4.392 -1.731 -3.533
ML 13 11 6 16 6 1 22 93 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 14 11 6 16 6 1 22 93 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 15 11 6 16 6 0 17 90 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 16 16 5 16 6 1 24 94 129 -2.948 -3.211 -0.550 -4.866 -5.642 -5.303 0.000 0.000 0.000 0.000
IR 17 17 6 17 5 1 24 94 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 4 ] - - u a - -
MP 18 17 6 22 6 4 26 93 127 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -3.993 -2.270 -4.247 1.598 -3.021 -4.721 1.668 -4.204 -4.376 1.245 -4.312 -1.255 2.413 -3.989 -0.241 -2.922
ML 19 17 6 22 6 1 21 91 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 20 17 6 22 6 1 21 91 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 21 17 6 22 6 0 17 88 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 22 22 5 22 6 1 23 92 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 23 23 6 23 5 1 23 92 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 5 ] - - A U - -
MP 24 23 6 28 6 4 25 91 125 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -4.344 -3.469 -5.057 3.164 -5.072 -5.103 0.812 -4.275 -4.723 1.426 -4.992 -1.365 0.560 -4.762 -1.911 -3.625
ML 25 23 6 28 6 1 21 89 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 26 23 6 28 6 1 20 89 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 27 23 6 28 6 0 17 86 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 28 28 5 28 6 1 22 90 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 29 29 6 29 5 1 22 90 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 6 ] - - a u - -
MP 30 29 6 34 6 4 23 89 123 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -3.985 -3.534 -4.413 2.331 -3.536 -4.705 1.399 -2.538 -4.302 1.571 -4.238 -0.857 1.777 -4.061 -0.727 -3.076
ML 31 29 6 34 6 1 20 87 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 32 29 6 34 6 1 19 87 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 33 29 6 34 6 0 16 84 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 34 34 5 34 6 1 21 88 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 35 35 6 35 5 1 21 88 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 7 ] - - u a - -
MP 36 35 6 40 6 3 21 87 121 -5.641 -9.943 -0.039 -8.719 -8.999 -9.394 -2.028 -3.746 -3.763 1.407 -1.776 -4.248 1.685 -3.757 -3.978 0.951 -4.019 -1.289 2.426 -3.538 0.105 -1.658
ML 37 35 6 40 6 1 19 86 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 38 35 6 40 6 1 18 85 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 39 35 6 40 6 0 16 83 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 40 40 5 40 6 1 20 86 121 -3.011 -3.273 -0.522 -4.929 -5.705 -5.365 0.000 0.000 0.000 0.000
IR 41 41 6 41 5 1 20 86 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 8 ] - - G C - -
MP 42 41 6 46 4 3 19 85 119 -8.651 -8.858 -0.016 -7.273 -4.207 -3.188 -5.142 1.951 -5.861 -4.898 -0.345 -1.996 -4.295 3.091 -3.989 -0.781 0.309 -4.298 -1.926 -3.553
ML 43 41 6 46 4 1 18 84 119 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 44 41 6 46 4 1 17 84 118 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 45 41 6 46 4 0 16 83 117 -4.568 -4.250 -2.265 -0.520
IL 46 46 5 46 4 1 18 85 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 47 47 6 47 3 1 18 85 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 9 ] - - U - - -
ML 48 47 6 50 3 2 17 83 117 -9.594 -0.007 -8.248 -0.772 -0.643 -1.820 1.316
D 49 47 6 50 3 0 15 81 116 -6.174 -1.687 -0.566
IL 50 50 3 50 3 1 17 84 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 10 ] - - G - - -
ML 51 50 3 53 2 1 16 82 116 -10.171 -0.001 -0.319 -2.275 1.436 -1.806
D 52 50 3 53 2 0 15 81 115 -8.445 -0.004
IL 53 53 3 53 2 1 16 83 117 -1.823 -0.479 0.000 0.000 0.000 0.000
[ BIF 11 ] - - - - - -
B 54 53 3 115 55 0 15 81 115
[ BEGR 39 ] - - - - - -
S 55 54 1 56 3 0 0 48 82 -9.594 -0.423 -1.985
IL 56 56 2 56 3 1 1 50 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 40 ] - - A - - -
ML 57 56 2 59 3 1 1 48 82 -9.181 -0.009 -7.835 1.720 -2.666 -2.621 -1.371
D 58 56 2 59 3 0 0 47 81 -9.198 -0.128 -3.590
IL 59 59 3 59 3 1 1 49 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 41 ] - - A - - -
ML 60 59 3 62 3 1 1 47 81 -9.594 -0.007 -8.248 1.001 -1.357 -1.369 0.287
D 61 59 3 62 3 0 0 45 80 -6.174 -1.687 -0.566
IL 62 62 3 62 3 1 1 48 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 42 ] - - u - - -
ML 63 62 3 65 3 1 1 46 80 -9.594 -0.007 -8.248 -0.241 -0.370 -0.555 0.765
D 64 62 3 65 3 0 0 44 79 -6.174 -1.687 -0.566
IL 65 65 3 65 3 1 1 47 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 43 ] - - A - - -
ML 66 65 3 68 3 1 1 45 79 -9.594 -0.054 -4.814 1.697 -2.749 -2.292 -1.307
D 67 65 3 68 3 0 0 44 78 -6.174 -1.687 -0.566
IL 68 68 3 68 3 1 1 46 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 44 ] - - U - - -
ML 69 68 3 71 5 1 1 44 79 -8.548 -0.063 -8.364 -8.576 -4.854 -1.419 -0.930 -2.781 1.563
D 70 68 3 71 5 0 0 43 77 -5.563 -0.476 -4.825 -3.199 -3.112
IL 71 71 3 71 5 1 1 44 79 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 45 ] - - g c - -
MP 72 71 3 76 6 2 2 43 78 -9.970 -9.909 -0.012 -8.686 -8.966 -9.361 -4.291 -3.271 -5.209 2.593 -5.929 -5.037 -0.418 -4.654 -4.407 2.794 -4.142 -0.358 -0.412 -4.439 -1.995 -3.616
ML 73 71 3 76 6 1 1 42 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 74 71 3 76 6 1 1 41 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 75 71 3 76 6 0 0 38 72 -9.835 -8.534 -4.331 -5.013 -5.030 -0.176
IL 76 76 5 76 6 1 1 43 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 77 77 6 77 5 1 1 42 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 46 ] - - a u - -
MP 78 77 6 82 6 2 2 41 76 -5.703 -5.801 -0.148 -8.686 -8.966 -4.165 -4.416 -3.844 -4.897 1.956 -3.970 -5.168 1.842 -4.655 -4.692 1.866 -4.494 -0.213 1.634 -4.487 -1.246 -3.421
ML 79 77 6 82 6 1 1 40 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 80 77 6 82 6 1 1 39 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 81 77 6 82 6 0 0 36 71 -9.835 -8.534 -4.331 -5.013 -5.030 -0.176
IL 82 82 5 82 6 1 1 41 75 -1.745 -3.564 -0.850 -5.219 -5.996 -5.656 0.000 0.000 0.000 0.000
IR 83 83 6 83 5 1 1 40 75 -2.651 -0.407 -6.162 -4.330 -5.436 0.000 0.000 0.000 0.000
[ MATP 47 ] - - g c - -
MP 84 83 6 88 6 2 2 39 74 -9.890 -9.829 -0.056 -4.956 -8.885 -9.280 -4.079 -2.023 -5.010 2.173 -5.713 -4.814 -0.222 -4.524 -4.186 2.862 -3.889 -0.675 0.807 -4.201 -1.811 -3.425
ML 85 83 6 88 6 1 1 38 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 86 83 6 88 6 1 1 38 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 87 83 6 88 6 0 0 36 70 -10.812 -9.510 -5.307 -5.989 -0.819 -1.357
IL 88 88 5 88 6 1 1 39 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 89 89 6 89 5 1 1 39 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 48 ] - - g c - -
MP 90 89 6 94 6 2 2 37 72 -9.846 -9.785 -0.135 -8.562 -3.592 -9.237 -2.020 -2.956 -4.586 2.251 -4.889 -4.552 0.223 -4.168 -3.971 2.657 -3.758 -0.637 0.595 -3.935 -0.953 -1.525
ML 91 89 6 94 6 1 1 36 70 -6.997 -7.343 -2.057 -0.513 -7.193 -4.722 0.572 -0.750 -0.638 0.352
MR 92 89 6 94 6 1 1 36 70 -8.174 -6.903 -2.812 -6.881 -0.307 -5.095 0.941 -1.172 -0.037 -0.597
D 93 89 6 94 6 0 0 35 69 -9.656 -8.354 -4.151 -4.834 -4.851 -0.201
IL 94 94 5 94 6 1 1 37 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 95 95 6 95 5 1 1 37 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 49 ] - - g c - -
MP 96 95 6 100 4 2 2 35 70 -3.924 -8.418 -0.117 -6.832 -0.101 -1.695 -2.014 1.556 -1.904 -1.328 0.432 -1.863 -2.026 2.169 -2.127 -0.365 0.724 -0.392 -0.333 -1.613
ML 97 95 6 100 4 1 1 34 69 -4.348 -4.530 -0.316 -3.260 0.881 -0.864 -0.683 -0.021
MR 98 95 6 100 4 1 1 35 69 -2.816 -5.931 -0.507 -2.859 -0.465 -1.297 -1.587 1.342
D 99 95 6 100 4 0 0 35 69 -1.487 -4.824 -2.840 -1.095
IL 100 100 5 100 4 1 1 36 71 -1.008 -4.493 -1.151 -6.978 0.000 0.000 0.000 0.000
IR 101 101 6 101 3 1 1 35 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 50 ] - - u - - -
ML 102 101 6 104 3 1 1 33 67 -9.594 -0.007 -8.248 0.155 -0.790 -0.875 0.818
D 103 101 6 104 3 0 0 31 65 -6.174 -1.687 -0.566
IL 104 104 3 104 3 1 1 34 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 51 ] - - U - - -
ML 105 104 3 107 3 1 1 32 66 -9.594 -0.048 -4.999 -1.129 -1.461 -2.854 1.605
D 106 104 3 107 3 0 0 29 63 -6.174 -1.687 -0.566
IL 107 107 3 107 3 1 1 33 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 52 ] - - u - - -
ML 108 107 3 110 3 1 1 31 65 -1.209 -2.472 -1.369 0.573 -0.474 -1.998 0.625
D 109 107 3 110 3 0 0 22 57 -7.023 -2.536 -0.286
IL 110 110 3 110 3 1 1 31 66 -0.776 -1.288 -7.274 0.000 0.000 0.000 0.000
[ MATL 53 ] - - u - - -
ML 111 110 3 113 2 1 1 1 1 * 0.000 0.003 -0.754 -0.547 0.783
D 112 110 3 113 2 0 0 0 0 * 0.000
IL 113 113 3 113 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 54 ] - - - - - -
E 114 113 3 -1 0 0 0 0 0
[ BEGL 12 ] - - - - - -
S 115 54 1 116 1 0 3 54 79 0.000
[ BIF 13 ] - - - - - -
B 116 115 1 117 155 0 3 54 79
[ BEGL 14 ] - - - - - -
S 117 116 1 118 4 0 0 36 61 -0.086 -7.931 -4.320 -7.978
[ MATP 15 ] - - c g - -
MP 118 117 1 122 6 2 2 36 61 -9.948 -9.887 -0.012 -8.663 -8.943 -9.338 -4.262 -4.482 -4.245 0.192 -1.645 -4.837 2.852 -4.360 -4.762 0.500 -4.492 -0.429 2.046 -4.289 -0.864 -3.121
ML 119 117 1 122 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 120 117 1 122 6 1 1 34 60 -7.851 -6.580 -0.670 -6.559 -1.692 -4.772 0.746 -0.837 -0.746 0.223
D 121 117 1 122 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 122 122 5 122 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 123 123 6 123 5 1 1 35 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 16 ] - - C G - -
MP 124 123 6 128 6 2 2 34 59 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -6.221 -6.522 -4.365 -1.851 -4.048 -4.970 3.704 -5.091 -8.167 -1.770 -4.405 -3.738 0.599 -6.978 -0.918 -5.186
ML 125 123 6 128 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 126 123 6 128 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 127 123 6 128 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 128 128 5 128 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 129 129 6 129 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 17 ] - - u a - -
MP 130 129 6 134 6 2 2 32 57 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -4.083 -4.071 -4.326 1.489 -1.553 -4.831 1.671 -4.292 -4.485 1.688 -4.444 -1.346 2.320 -4.090 -0.908 -2.999
ML 131 129 6 134 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 132 129 6 134 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 133 129 6 134 6 0 0 27 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 134 134 5 134 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 135 135 6 135 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 18 ] - - g a - -
MP 136 135 6 140 4 2 2 30 55 -1.217 -4.620 -0.936 -7.273 -2.600 -3.355 -3.190 -0.178 -2.279 -3.871 0.515 -3.386 2.864 -1.541 -3.688 -1.170 1.394 -2.936 0.606 -0.957
ML 137 135 6 140 4 1 1 26 52 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 138 135 6 140 4 1 1 25 51 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 139 135 6 140 4 0 0 25 50 -4.568 -4.250 -2.265 -0.520
IL 140 140 5 140 4 1 1 29 54 -1.042 -2.173 -1.786 -8.576 0.000 0.000 0.000 0.000
IR 141 141 6 141 3 1 1 24 46 -1.209 -0.855 -6.128 0.000 0.000 0.000 0.000
[ MATL 19 ] - - A - - -
ML 142 141 6 144 3 1 1 15 34 -9.594 -0.199 -2.972 1.291 -1.758 -1.377 -0.198
D 143 141 6 144 3 0 0 15 34 -6.174 -1.687 -0.566
IL 144 144 3 144 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 20 ] - - u - - -
ML 145 144 3 147 3 1 1 14 32 -9.403 -0.008 -8.057 0.130 -1.050 -0.570 0.807
D 146 144 3 147 3 0 0 13 32 -8.361 -0.878 -1.143
IL 147 147 3 147 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 21 ] - - a - - -
ML 148 147 3 150 3 1 1 12 30 -9.523 -0.007 -8.177 0.435 -1.061 -0.094 0.301
D 149 147 3 150 3 0 0 12 31 -7.429 -2.942 -0.211
IL 150 150 3 150 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 22 ] - - A - - -
ML 151 150 3 153 2 1 1 1 1 * 0.000 1.398 -1.931 -1.589 -0.378
D 152 150 3 153 2 0 0 0 0 * 0.000
IL 153 153 3 153 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 23 ] - - - - - -
E 154 153 3 -1 0 0 0 0 0
[ BEGR 24 ] - - - - - -
S 155 116 1 156 3 0 0 31 49 -9.594 -0.007 -8.248
IL 156 156 2 156 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 25 ] - - G - - -
ML 157 156 2 159 5 1 1 31 49 -8.594 -0.014 -8.409 -8.621 -9.513 0.381 -1.854 1.024 -1.367
D 158 156 2 159 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508
IL 159 159 3 159 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 26 ] - - u a - -
MP 160 159 3 164 6 2 2 30 48 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -3.892 -4.081 -4.038 0.842 -1.111 -4.593 2.127 -4.058 -4.328 0.684 -4.309 -0.512 2.457 -3.846 -0.305 -1.698
ML 161 159 3 164 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 162 159 3 164 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 163 159 3 164 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 164 164 5 164 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 165 165 6 165 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 27 ] - - u a - -
MP 166 165 6 170 6 2 2 28 46 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -4.417 -4.553 -4.565 1.085 -3.149 -5.158 2.084 -4.545 -4.877 0.404 -4.843 -0.834 2.688 -4.408 -0.378 -3.184
ML 167 165 6 170 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 168 165 6 170 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 169 165 6 170 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 170 170 5 170 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 171 171 6 171 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 28 ] - - a u - -
MP 172 171 6 176 6 2 2 26 44 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -4.370 -3.423 -5.210 2.829 -5.530 -5.169 -0.287 -4.592 -4.574 2.250 -4.443 -1.086 1.086 -4.617 -1.949 -3.674
ML 173 171 6 176 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 174 171 6 176 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 175 171 6 176 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 176 176 5 176 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 177 177 6 177 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 29 ] - - c g - -
MP 178 177 6 182 6 2 2 24 42 -10.004 -9.943 -0.011 -8.719 -8.999 -9.394 -4.720 -4.876 -4.856 0.905 -3.443 -5.490 2.506 -4.836 -5.210 -0.018 -5.160 -1.752 2.384 -4.779 0.594 -3.504
ML 179 177 6 182 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 180 177 6 182 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 181 177 6 182 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 182 182 5 182 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 183 183 6 183 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 30 ] - - u a - -
MP 184 183 6 188 4 2 2 22 40 -8.651 -8.858 -0.016 -7.273 -3.743 -3.888 -3.881 1.177 -1.304 -4.388 2.063 -3.881 -4.140 0.939 -4.139 -0.802 2.195 -2.280 0.360 -2.675
ML 185 183 6 188 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 186 183 6 188 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 187 183 6 188 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
IL 188 188 5 188 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 189 189 6 189 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 31 ] - - U - - -
ML 190 189 6 192 3 1 1 19 37 -9.594 -0.007 -8.248 -1.618 -0.983 -2.226 1.563
D 191 189 6 192 3 0 0 19 37 -6.174 -1.687 -0.566
IL 192 192 3 192 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 32 ] - - U - - -
ML 193 192 3 195 3 1 1 18 36 -9.594 -0.007 -8.248 -3.207 -2.459 -3.974 1.866
D 194 192 3 195 3 0 0 18 36 -6.174 -1.687 -0.566
IL 195 195 3 195 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 33 ] - - G - - -
ML 196 195 3 198 3 1 1 16 35 -9.594 -0.007 -8.248 -2.780 -4.225 1.893 -3.505
D 197 195 3 198 3 0 0 17 35 -6.174 -1.687 -0.566
IL 198 198 3 198 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 34 ] - - A - - -
ML 199 198 3 201 3 1 1 15 34 -9.594 -0.007 -8.248 1.943 -4.566 -4.280 -4.018
D 200 198 3 201 3 0 0 16 34 -6.174 -1.687 -0.566
IL 201 201 3 201 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 35 ] - - U - - -
ML 202 201 3 204 3 1 1 14 32 -9.594 -0.007 -8.248 -3.478 -3.261 -4.205 1.908
D 203 201 3 204 3 0 0 15 33 -6.174 -1.687 -0.566
IL 204 204 3 204 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 36 ] - - A - - -
ML 205 204 3 207 3 1 1 12 30 -9.594 -0.007 -8.248 1.531 -2.672 -0.459 -2.143
D 206 204 3 207 3 0 0 13 32 -6.174 -1.687 -0.566
IL 207 207 3 207 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 37 ] - - a - - -
ML 208 207 3 210 2 1 1 1 1 * 0.000 0.570 -1.377 -0.010 0.186
D 209 207 3 210 2 0 0 0 0 * 0.000
IL 210 210 3 210 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 38 ] - - - - - -
E 211 210 3 -1 0 0 0 0 0
//
HMMER3/f [3.1b3 | July 2016]
NAME I.seed25-1
LENG 66
MAXL 98
ALPH RNA
RF no
MM no
CONS yes
CS yes
MAP no
DATE Sun Jan 19 18:59:14 2020
COM [1] cmbuild I/I.seed25.cm I/I.seed25.stk
COM [2] cmcalibrate -s 1244126671 I/I.seed25.cm
NSEQ 37
EFFN 9.876000
STATS LOCAL MSV -8.8284 0.74628
STATS LOCAL VITERBI -10.0579 0.74628
STATS LOCAL FORWARD -3.0852 0.74628
HMM A C G U
m->m m->i m->d i->m i->i d->m d->d
COMPO 1.25436 1.72469 1.46043 1.18949
1.38629 1.38629 1.38629 1.38629
0.01027 5.88054 4.90352 0.16007 1.91109 0.00000 *
1 0.56399 2.62980 1.27121 2.54490 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00494 6.87599 5.54733 0.19915 1.71161 1.41906 0.27699
2 1.28014 2.35133 0.81539 1.69122 - g - - (
1.38629 1.38629 1.38629 1.38629
0.02105 4.08011 5.54087 0.14776 1.98516 1.42811 0.27412
3 1.55812 1.55208 1.71120 0.92378 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00505 6.86158 5.52465 0.19915 1.71161 1.43689 0.27137
4 0.56265 2.14642 1.62679 2.14695 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00504 6.86277 5.52651 0.19915 1.71161 1.45622 0.26542
5 1.11723 1.69680 1.48472 1.33567 - a - - (
1.38629 1.38629 1.38629 1.38629
0.00504 6.86276 5.52650 0.19915 1.71161 1.46992 0.26129
6 1.65254 1.48389 1.86737 0.85061 - u - - (
1.38629 1.38629 1.38629 1.38629
0.02427 3.91231 5.52573 0.14060 2.03129 1.48003 0.25829
7 1.36810 2.67820 0.55610 2.27032 - g - - (
1.38629 1.38629 1.38629 1.38629
0.01075 5.81833 4.86395 0.39722 1.11531 1.16454 0.37406
8 1.92114 1.83173 2.64756 0.47385 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
9 1.60739 2.96318 0.39091 2.63810 - g - - ,
1.38629 1.38629 1.38629 1.38629
0.05640 7.05017 2.91929 0.34813 1.22419 0.05553 2.91842
10 2.49964 0.74413 1.96482 1.19548 - c - - <
1.38629 1.38629 1.38629 1.38629
0.00508 6.84470 5.52057 0.19915 1.71161 0.48788 0.95173
11 3.73527 0.20029 3.60732 2.03628 - c - - <
1.38629 1.38629 1.38629 1.38629
0.00499 6.86986 5.53766 0.19915 1.71161 1.19662 0.35984
12 1.67588 1.49029 1.46348 1.03249 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00503 6.86422 5.52879 0.19915 1.71161 1.29504 0.32005
13 2.52022 2.18240 0.67852 1.20591 - g - - <
1.38629 1.38629 1.38629 1.38629
0.57347 0.84858 4.77869 0.67271 0.71401 1.10919 0.40022
14 0.49129 2.60470 2.34061 1.52339 - a - - _
1.38629 1.38629 1.38629 1.38629
0.13783 6.64995 2.05993 0.49466 0.94104 1.15530 0.37828
15 1.29630 2.11421 1.78150 0.82704 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00525 6.51736 5.58439 0.49466 0.94104 0.60552 0.78920
16 1.08481 2.12176 1.45148 1.17769 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00483 6.60081 5.66784 0.49466 0.94104 2.03329 0.14030
17 0.41715 2.72464 2.48758 1.64818 - a - - _
1.38629 1.38629 1.38629 1.38629
0.26822 1.50225 4.37173 0.56929 0.83455 0.05136 2.99441
18 0.44603 3.18841 1.62837 2.10087 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00514 6.53196 5.60717 0.22392 1.60633 1.14219 0.38437
19 1.07733 1.55908 1.43615 1.55436 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00476 6.47562 5.74051 0.22107 1.61778 0.96807 0.47774
20 2.25548 3.72731 0.17228 3.52756 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00404 6.37164 6.06555 0.21651 1.63644 0.64786 0.74059
21 1.23613 2.31502 0.74568 1.99276 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 0.00330 5.71553
22 1.12223 2.67142 0.67654 2.33386 - g - - ,
1.38629 1.38629 1.38629 1.38629
0.00652 5.95669 5.54436 0.21943 1.62445 0.43461 1.04275
23 2.08220 1.17820 1.89248 0.87512 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00482 6.89372 5.57551 0.19915 1.71161 1.28617 0.32342
24 1.95262 1.28745 2.10035 0.77716 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00490 6.88229 5.55731 0.19915 1.71161 1.35348 0.29886
25 0.78897 2.85737 1.10388 1.85352 - a - - <
1.38629 1.38629 1.38629 1.38629
0.00495 6.87547 5.54651 0.19915 1.71161 1.39460 0.28493
26 2.07866 1.01265 2.47293 0.85025 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00498 6.87110 5.53962 0.19915 1.71161 1.42315 0.27569
27 1.85934 1.22760 1.81402 0.94615 - u - - <
1.38629 1.38629 1.38629 1.38629
0.01045 5.85008 4.89064 0.39722 1.11531 1.15034 0.38057
28 2.50784 2.06769 2.92928 0.30294 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00460 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
29 3.60897 3.09049 4.14061 0.09263 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
30 3.31355 4.31515 0.07447 3.81608 - G - - _
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
31 0.03962 4.55132 4.35308 4.17147 - A - - _
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
32 3.79735 3.64694 4.30127 0.06406 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00460 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
33 0.32525 3.23855 1.70462 2.87188 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
34 0.99126 2.34082 1.39329 1.25743 - a - - _
1.38629 1.38629 1.38629 1.38629
0.01534 5.49261 4.50006 0.55970 0.84719 0.06249 2.80385
35 1.13907 1.96589 1.05438 1.65317 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00441 6.64656 5.77679 0.22291 1.61037 1.06418 0.42314
36 1.08976 2.68837 0.79413 1.93977 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00406 6.65968 5.88718 0.22144 1.61626 0.96678 0.47853
37 1.96018 1.18182 2.62317 0.73423 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00360 6.67801 6.05964 0.21946 1.62433 0.83009 0.57272
38 0.88002 2.40408 1.14747 1.72913 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00293 6.70503 6.37376 0.21660 1.63607 0.62289 0.76871
39 0.96886 2.19626 1.10810 1.71992 - a - - >
1.38629 1.38629 1.38629 1.38629
0.29298 6.64983 1.37568 0.49466 0.94104 0.29169 1.37438
40 0.19436 3.23450 3.20331 2.33688 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00612 6.36367 5.43069 0.49466 0.94104 0.08686 2.48654
41 0.69221 2.32666 2.33497 1.18712 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00460 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
42 1.55333 1.64275 1.77098 0.85603 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00459 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
43 0.20987 3.29160 2.97483 2.29208 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.03754 6.65016 3.33692 0.49466 0.94104 1.15530 0.37828
44 2.36962 2.03067 3.31369 0.30265 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.04068 5.92520 3.29167 0.21943 1.62445 0.26061 1.47220
45 0.94550 2.94219 0.71889 2.63850 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00507 6.85109 5.52249 0.19915 1.71161 2.04600 0.13840
46 1.37525 1.46177 1.25037 1.47403 - g - - <
1.38629 1.38629 1.38629 1.38629
0.08184 3.95485 2.82319 0.37349 1.16580 2.03092 0.14066
47 1.19203 2.80367 0.69595 1.98623 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00562 6.76257 5.41421 0.19915 1.71161 2.63321 0.07456
48 1.12297 2.48015 0.83888 1.84036 - g - - <
1.38629 1.38629 1.38629 1.38629
0.08834 6.61380 2.48642 0.19915 1.71161 2.01448 0.14317
49 1.26249 1.94567 1.04296 1.50621 - g - - <
1.38629 1.38629 1.38629 1.38629
0.08089 2.72817 4.39299 0.69974 0.68660 0.31227 1.31596
50 1.27885 1.93388 1.99279 0.81929 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00460 6.64980 5.71682 0.49466 0.94104 1.15530 0.37828
51 2.16904 2.39917 3.36472 0.27398 - u - - _
1.38629 1.38629 1.38629 1.38629
0.03311 6.64990 3.46488 0.49466 0.94104 1.15530 0.37828
52 0.98916 1.71488 2.77124 0.95311 - u - - _
1.38629 1.38629 1.38629 1.38629
1.71343 0.83798 0.94889 0.88625 0.53136 1.75039 0.19081
53 1.38426 1.90897 1.76549 0.84361 - u - - _
1.38629 1.38629 1.38629 1.38629
0.07204 4.25610 2.89446 0.58229 0.81784 0.07214 2.66498
54 1.65051 1.08422 1.87467 1.15051 - c - - >
1.38629 1.38629 1.38629 1.38629
0.01504 6.18917 4.35204 0.25070 1.50625 2.37645 0.09748
55 1.98027 0.93963 2.11685 1.04759 - c - - >
1.38629 1.38629 1.38629 1.38629
0.06254 6.45251 2.82945 0.24002 1.54464 0.82109 0.57973
56 2.11706 0.75025 2.54096 1.11299 - c - - >
1.38629 1.38629 1.38629 1.38629
0.02716 3.87947 5.09344 0.17482 1.83013 0.49681 0.93770
57 1.58560 1.44343 1.36698 1.19012 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00686 6.53333 5.22529 0.23315 1.57037 2.24412 0.11207
58 2.86724 0.81534 2.67691 0.83961 - c - - >
1.38629 1.38629 1.38629 1.38629
0.02043 5.39680 4.15437 0.58811 0.81053 0.01589 4.14983
59 2.44102 0.61223 2.62815 1.20873 - c - - )
1.38629 1.38629 1.38629 1.38629
0.00730 5.68200 5.55591 0.21503 1.64256 1.10355 0.40300
60 0.98468 2.00745 1.28652 1.53303 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00510 6.62203 5.58564 0.22585 1.59869 1.23833 0.34230
61 1.47982 1.62426 1.56627 1.00391 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00499 6.62662 5.61320 0.22536 1.60061 1.19842 0.35906
62 2.29192 1.72816 2.03572 0.52639 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00490 6.63145 5.63604 0.22495 1.60225 1.15059 0.38045
63 1.05612 1.78734 1.35604 1.48230 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00609 5.77411 5.82075 0.21394 1.64713 0.88059 0.53535
64 1.79830 0.95833 2.17423 1.08710 - c - - )
1.38629 1.38629 1.38629 1.38629
0.00390 6.67979 5.93691 0.22097 1.61818 0.91258 0.51331
65 2.74283 1.48005 2.48587 0.47043 - u - - )
1.38629 1.38629 1.38629 1.38629
0.01241 5.88853 4.64976 0.23437 1.56575 0.72656 0.66082
66 0.80051 2.24780 2.14591 1.11381 - a - - :
1.38629 1.38629 1.38629 1.38629
* 0.00000 * 0.30554 1.33456 0.00000 *
//