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Metazoa_E.cm
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INFERNAL1/a [1.1.2 | July 2016]
NAME E.seed25-1
STATES 212
NODES 55
CLEN 66
W 107
ALPH RNA
RF no
CONS yes
MAP no
DATE Thu Jun 4 15:12:43 2009
COM [1] cmbuild E/E.seed25.cm E/E.seed25.stk
COM [2] cmcalibrate -s 1244121171 E/E.seed25.cm
COM [3] cmconvert -o ./annotation/tm/Metazoa_E.cm ./annotation/models/Metazoa_E.cm
PBEGIN 0.05
PEND 0.05
WBETA 1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA 0.03125
N3OMEGA 0.03125
ELSELF -0.08926734
NSEQ 51
EFFN 16.709999
NULL 0.000 0.000 0.000 0.000
EFP7GF -4.8097 0.74459
ECMLC 0.71810 -4.79576 3.07300 1500000 320006 0.003516
ECMGC 0.41303 -13.10231 -1.54008 1500000 44468 0.008433
ECMLI 0.61399 -4.62379 4.27900 1500000 266127 0.004227
ECMGI 0.45263 -9.84585 0.63573 1500000 43097 0.008701
CM
[ ROOT 0 ] - - - - - -
S 0 -1 0 1 4 0 1 107 156 -9.144 -10.389 -0.016 -6.843
IL 1 1 2 1 4 4 25 109 157 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000
IR 2 2 3 2 3 4 26 109 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
[ MATR 1 ] - - - A - -
MR 3 2 3 5 5 6 30 108 156 -9.231 -0.009 -9.047 -9.259 -10.151 1.134 -2.435 -1.401 0.312
D 4 2 3 5 5 2 21 106 154 -5.352 -0.707 -2.978 -4.409 -2.404
IR 5 5 3 5 5 4 25 108 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 2 ] - - a u - -
MP 6 5 3 10 6 7 30 107 155 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -2.285 -2.113 -2.401 2.021 -1.330 -2.608 -0.166 -1.292 -2.428 1.513 -1.580 1.781 0.284 -2.059 -1.220 -0.405
ML 7 5 3 10 6 3 23 105 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 8 5 3 10 6 3 23 104 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 9 5 3 10 6 1 18 101 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 10 10 5 10 6 4 24 106 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 11 11 6 11 5 4 24 106 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 3 ] - - u a - -
MP 12 11 6 16 6 7 29 105 153 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.795 -4.944 -4.937 0.584 -3.510 -5.534 2.080 -4.919 -5.259 0.034 -5.224 -0.155 2.733 -4.783 0.361 -3.551
ML 13 11 6 16 6 3 22 103 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 14 11 6 16 6 3 22 102 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 15 11 6 16 6 1 18 99 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 16 16 5 16 6 3 24 104 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 17 17 6 17 5 4 24 104 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 4 ] - - u a - -
MP 18 17 6 22 6 6 27 103 151 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.454 -4.694 -4.643 0.510 -1.911 -5.248 1.876 -4.669 -4.921 0.521 -4.943 -1.829 2.987 -4.471 -0.749 -3.308
ML 19 17 6 22 6 3 22 101 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 20 17 6 22 6 3 22 100 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 21 17 6 22 6 1 18 97 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 22 22 5 22 6 3 23 102 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 23 23 6 23 5 3 23 102 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 5 ] - - u a - -
MP 24 23 6 28 6 6 25 101 149 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.290 -4.472 -4.440 0.961 -1.898 -5.010 1.783 -4.461 -4.739 1.274 -4.705 -1.025 2.524 -4.255 0.286 -3.101
ML 25 23 6 28 6 3 21 99 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 26 23 6 28 6 3 21 98 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 27 23 6 28 6 1 17 95 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 28 28 5 28 6 3 23 100 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 29 29 6 29 5 3 23 100 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 6 ] - - u a - -
MP 30 29 6 34 6 6 24 99 147 -10.487 -10.426 -0.030 -5.922 -9.482 -9.878 -4.317 -4.513 -4.469 1.424 -3.081 -5.047 2.024 -2.390 -4.771 0.418 -4.743 -1.682 2.508 -4.288 0.259 -3.128
ML 31 29 6 34 6 3 21 97 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 32 29 6 34 6 3 20 97 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 33 29 6 34 6 1 17 94 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 34 34 5 34 6 3 22 98 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 35 35 6 35 5 3 22 98 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 7 ] - - u a - -
MP 36 35 6 40 6 6 22 97 145 -10.465 -10.405 -0.008 -9.181 -9.461 -9.856 -3.655 -3.730 -3.774 1.175 -2.788 -4.192 1.633 -2.132 -2.045 0.665 -4.017 -0.536 2.409 -3.528 0.331 -0.418
ML 37 35 6 40 6 3 20 95 144 -6.846 -7.193 -0.724 -1.601 -7.042 -4.572 0.235 -0.691 -0.610 0.631
MR 38 35 6 40 6 2 19 95 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 39 35 6 40 6 1 17 93 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 40 40 5 40 6 3 20 96 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 41 41 6 41 5 3 20 96 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 8 ] - - g c - -
MP 42 41 6 46 4 4 20 95 143 -9.326 -9.533 -0.010 -7.947 -2.019 -3.552 -5.025 2.021 -4.825 -5.073 0.637 -4.696 -4.510 2.301 -4.275 0.329 1.523 -4.420 -1.185 -1.843
ML 43 41 6 46 4 2 18 94 142 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 44 41 6 46 4 2 18 93 141 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 45 41 6 46 4 0 16 92 140 -4.568 -4.250 -2.265 -0.520
IL 46 46 5 46 4 3 19 95 143 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 47 47 6 47 3 2 19 94 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 9 ] - - U - - -
ML 48 47 6 50 3 2 18 93 141 -10.256 -0.004 -8.910 -1.148 -2.992 -2.862 1.716
D 49 47 6 50 3 0 16 91 139 -6.174 -1.687 -0.566
IL 50 50 3 50 3 2 18 93 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 10 ] - - A - - -
ML 51 50 3 53 2 1 17 92 140 -10.862 -0.001 1.726 -2.781 -1.357 -2.687
D 52 50 3 53 2 0 16 91 139 -8.445 -0.004
IL 53 53 3 53 2 1 17 92 140 -1.823 -0.479 0.000 0.000 0.000 0.000
[ BIF 11 ] - - - - - -
B 54 53 3 112 55 0 16 91 139
[ BEGR 40 ] - - - - - -
S 55 54 1 56 3 0 0 58 107 -10.256 -0.004 -8.910
IL 56 56 2 56 3 1 1 60 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 41 ] - - A - - -
ML 57 56 2 59 3 1 1 58 107 -10.256 -0.004 -8.910 1.695 -3.096 -1.673 -1.589
D 58 56 2 59 3 0 0 56 104 -6.174 -1.687 -0.566
IL 59 59 3 59 3 1 1 59 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 42 ] - - g - - -
ML 60 59 3 62 3 1 1 57 106 -10.256 -0.004 -8.910 0.614 -2.800 0.986 -1.530
D 61 59 3 62 3 0 0 55 103 -6.174 -1.687 -0.566
IL 62 62 3 62 3 1 1 58 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 43 ] - - g - - -
ML 63 62 3 65 3 1 1 56 105 -10.256 -0.004 -8.910 0.380 -1.580 0.657 -0.346
D 64 62 3 65 3 0 0 54 103 -6.174 -1.687 -0.566
IL 65 65 3 65 3 1 1 57 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 44 ] - - U - - -
ML 66 65 3 68 5 1 1 55 104 -9.231 -0.087 -9.047 -9.259 -4.237 -0.022 -1.025 -1.329 1.088
D 67 65 3 68 5 0 0 54 102 -4.959 -0.803 -4.221 -2.596 -2.508
IL 68 68 3 68 5 1 1 56 104 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 45 ] - - g c - -
MP 69 68 3 73 6 2 2 54 103 -10.426 -10.365 -0.008 -9.142 -9.421 -9.816 -4.599 -3.590 -5.540 1.997 -6.198 -5.385 1.112 -5.043 -4.716 2.889 -4.401 -0.528 0.167 -4.751 -2.154 -3.914
ML 70 68 3 73 6 1 1 52 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 71 68 3 73 6 1 1 52 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 72 68 3 73 6 0 0 46 94 -10.549 -9.248 -5.045 -5.727 -5.744 -0.105
IL 73 73 5 73 6 1 1 54 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 74 74 6 74 5 1 1 54 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 46 ] - - g c - -
MP 75 74 6 79 6 2 2 52 101 -10.426 -10.365 -0.045 -9.142 -9.421 -5.265 -4.861 -4.368 -5.286 1.490 -4.222 -5.617 1.827 -5.080 -5.166 2.134 -4.974 -0.810 1.988 -4.921 -1.558 -3.798
ML 76 74 6 79 6 1 1 50 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 77 74 6 79 6 1 1 50 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 78 74 6 79 6 0 0 44 92 -10.549 -9.248 -5.045 -5.727 -5.744 -0.105
IL 79 79 5 79 6 1 1 52 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 80 80 6 80 5 1 1 52 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 47 ] - - g c - -
MP 81 80 6 85 6 2 2 51 99 -10.389 -10.329 -0.111 -3.843 -9.385 -9.780 -4.537 -4.061 -4.987 1.705 -3.984 -5.299 1.868 -4.809 -4.834 2.135 -4.653 -1.424 1.768 -4.594 -1.480 -2.439
ML 82 80 6 85 6 1 1 48 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 83 80 6 85 6 1 1 48 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 84 80 6 85 6 0 0 41 89 -11.005 -9.704 -5.501 -6.183 -6.200 -0.076
IL 85 85 5 85 6 1 1 50 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 86 86 6 86 5 1 1 50 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 48 ] - - g c - -
MP 87 86 6 91 6 2 2 49 97 -10.288 -10.227 -0.202 -9.004 -2.987 -9.679 -4.047 -3.497 -4.525 2.000 -3.887 -4.729 1.162 -1.861 -4.280 2.129 -4.127 -0.653 1.613 -4.071 -0.927 -1.230
ML 88 86 6 91 6 1 1 43 92 -7.925 -8.271 -2.986 -1.088 -8.121 -1.349 0.524 -1.008 0.185 -0.107
MR 89 86 6 91 6 1 1 45 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 90 86 6 91 6 0 0 38 86 -11.005 -9.704 -5.501 -6.183 -6.200 -0.076
IL 91 91 5 91 6 1 1 48 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 92 92 6 92 5 1 1 48 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 49 ] - - g c - -
MP 93 92 6 97 4 2 2 47 95 -0.960 -8.995 -1.662 -2.575 -0.851 -0.137 -1.554 0.919 -1.444 -1.776 -0.127 -1.422 -0.823 1.492 -0.829 0.356 1.209 -0.165 -0.218 0.102
ML 94 92 6 97 4 1 1 39 88 -4.563 -4.746 -0.648 -1.825 0.082 0.075 -0.806 0.397
MR 95 92 6 97 4 1 1 35 83 -7.059 -6.088 -3.956 -0.131 0.501 -1.075 -1.275 0.763
D 96 92 6 97 4 0 0 34 82 -6.921 -6.603 -1.521 -0.660
IL 97 97 5 97 4 1 1 47 95 -0.551 -7.148 -1.695 -9.633 0.000 0.000 0.000 0.000
IR 98 98 6 98 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 50 ] - - a - - -
ML 99 98 6 101 3 1 1 15 33 -9.642 -0.006 -8.296 0.897 -1.119 -0.918 0.200
D 100 98 6 101 3 0 0 14 32 -10.236 -0.502 -1.770
IL 101 101 3 101 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 51 ] - - u - - -
ML 102 101 3 104 3 1 1 13 32 -10.115 -0.005 -8.769 0.445 -1.063 -0.958 0.719
D 103 101 3 104 3 0 0 13 32 -8.558 -0.473 -1.853
IL 104 104 3 104 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 52 ] - - u - - -
ML 105 104 3 107 3 1 1 11 30 -10.232 -0.004 -8.886 0.317 -1.122 -1.187 0.892
D 106 104 3 107 3 0 0 13 31 -6.997 -0.712 -1.389
IL 107 107 3 107 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 53 ] - - u - - -
ML 108 107 3 110 2 1 1 1 1 * 0.000 0.267 -0.742 -1.495 0.883
D 109 107 3 110 2 0 0 0 0 * 0.000
IL 110 110 3 110 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 54 ] - - - - - -
E 111 110 3 -1 0 0 0 0 0
[ BEGL 12 ] - - - - - -
S 112 54 1 113 1 0 4 57 89 0.000
[ BIF 13 ] - - - - - -
B 113 112 1 114 155 0 4 57 89
[ BEGL 14 ] - - - - - -
S 114 113 1 115 4 0 0 39 71 -0.014 -8.475 -7.882 -8.522
[ MATP 15 ] - - G C - -
MP 115 114 1 119 6 2 2 39 71 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -5.356 -3.894 -6.292 0.402 -6.857 -4.988 -1.272 -5.761 -5.012 3.443 -4.641 1.129 -0.710 -4.725 -2.924 -2.419
ML 116 114 1 119 6 1 1 37 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 117 114 1 119 6 1 1 37 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 118 114 1 119 6 0 0 34 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 119 119 5 119 6 1 1 39 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 120 120 6 120 5 1 1 38 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 16 ] - - U A - -
MP 121 120 6 125 6 2 2 37 69 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -7.941 -6.845 -8.163 -3.140 -7.464 -9.948 -3.524 -7.289 -7.454 -3.402 -7.508 -3.854 3.957 -7.811 -4.330 -6.566
ML 122 120 6 125 6 1 1 35 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 123 120 6 125 6 1 1 35 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 124 120 6 125 6 0 0 32 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 125 125 5 125 6 1 1 37 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 126 126 6 126 5 1 1 36 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 17 ] - - g c - -
MP 127 126 6 131 6 2 2 35 67 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -5.027 -4.083 -5.848 2.163 -5.739 -5.828 0.951 -5.377 -5.185 2.478 -4.887 -1.494 1.638 -5.185 -2.053 -4.210
ML 128 126 6 131 6 1 1 33 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 129 126 6 131 6 1 1 33 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 130 126 6 131 6 0 0 30 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 131 131 5 131 6 1 1 35 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 132 132 6 132 5 1 1 34 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 18 ] - - u a - -
MP 133 132 6 137 4 2 2 33 65 -1.454 -4.115 -0.847 -5.553 -3.446 -3.760 -3.765 1.159 -1.556 -4.250 0.507 -3.792 -3.803 0.663 -4.088 -1.136 2.164 -3.506 1.999 -0.141
ML 134 132 6 137 4 1 1 31 63 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 135 132 6 137 4 1 1 30 62 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 136 132 6 137 4 0 0 29 61 -4.568 -4.250 -2.265 -0.520
IL 137 137 5 137 4 1 1 33 65 -3.155 -1.637 -0.829 -8.190 0.000 0.000 0.000 0.000
IR 138 138 6 138 3 1 1 33 65 -0.830 -1.353 -4.438 0.000 0.000 0.000 0.000
[ MATL 19 ] - - A - - -
ML 139 138 6 141 3 1 1 16 34 -10.201 -0.004 -8.855 1.510 -1.973 -1.799 -0.715
D 140 138 6 141 3 0 0 16 34 -7.610 -3.123 -0.184
IL 141 141 3 141 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 20 ] - - a - - -
ML 142 141 3 144 3 1 1 15 33 -10.201 -0.004 -8.855 0.972 -1.347 -0.518 -0.079
D 143 141 3 144 3 0 0 15 33 -7.610 -3.123 -0.184
IL 144 144 3 144 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 21 ] - - a - - -
ML 145 144 3 147 3 1 1 13 32 -10.201 -0.228 -2.780 0.516 -0.985 -0.173 0.236
D 146 144 3 147 3 0 0 13 32 -7.610 -1.325 -0.747
IL 147 147 3 147 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 22 ] - - U - - -
ML 148 147 3 150 3 1 1 12 30 -10.007 -0.025 -5.953 0.066 -0.889 -1.524 1.046
D 149 147 3 150 3 0 0 11 30 -9.207 -0.543 -1.680
IL 150 150 3 150 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 23 ] - - A - - -
ML 151 150 3 153 2 1 1 1 1 * 0.000 1.622 -2.900 -2.062 -0.865
D 152 150 3 153 2 0 0 0 0 * 0.000
IL 153 153 3 153 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 24 ] - - - - - -
E 154 153 3 -1 0 0 0 0 0
[ BEGR 25 ] - - - - - -
S 155 113 1 156 3 0 0 30 49 -10.256 -0.004 -8.910
IL 156 156 2 156 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 26 ] - - A - - -
ML 157 156 2 159 5 1 1 30 49 -9.231 -0.009 -9.047 -9.259 -10.151 1.020 -1.421 0.182 -1.108
D 158 156 2 159 5 0 0 29 47 -4.959 -0.803 -4.221 -2.596 -2.508
IL 159 159 3 159 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 27 ] - - u a - -
MP 160 159 3 164 6 2 2 29 48 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.366 -2.404 -4.545 1.158 -3.181 -5.104 1.729 -4.552 -4.807 0.860 -4.768 -1.214 2.818 -4.348 -1.109 -3.196
ML 161 159 3 164 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 162 159 3 164 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 163 159 3 164 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 164 164 5 164 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 165 165 6 165 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 28 ] - - u a - -
MP 166 165 6 170 6 2 2 27 46 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.349 -4.530 -4.501 1.296 -3.110 -5.077 1.934 -4.520 -4.802 0.824 -4.767 -1.688 2.600 -4.319 -0.110 -2.270
ML 167 165 6 170 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 168 165 6 170 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 169 165 6 170 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 170 170 5 170 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 171 171 6 171 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 29 ] - - A U - -
MP 172 171 6 176 6 2 2 25 44 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.327 -3.459 -5.042 3.319 -5.295 -5.069 -0.115 -4.185 -4.765 1.040 -5.282 -0.734 0.855 -4.824 -2.517 -3.688
ML 173 171 6 176 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 174 171 6 176 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 175 171 6 176 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 176 176 5 176 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 177 177 6 177 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 30 ] - - g c - -
MP 178 177 6 182 6 2 2 23 42 -10.487 -10.426 -0.008 -9.203 -9.482 -9.878 -4.836 -3.928 -5.629 1.648 -5.480 -5.623 1.687 -5.201 -4.999 2.413 -4.708 0.753 1.023 -4.974 -2.012 -4.033
ML 179 177 6 182 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.660 -0.612 -0.293 -0.076
MR 180 177 6 182 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.660 -0.612 -0.293 -0.076
D 181 177 6 182 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 182 182 5 182 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 183 183 6 183 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 31 ] - - c g - -
MP 184 183 6 188 4 2 2 21 40 -9.326 -9.533 -0.010 -7.947 -4.484 -4.574 -4.656 1.827 -3.307 -5.204 2.230 -4.643 -4.916 0.610 -4.872 -1.145 1.689 -4.461 0.899 -1.801
ML 185 183 6 188 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.660 -0.612 -0.293 -0.076
MR 186 183 6 188 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.660 -0.612 -0.293 -0.076
D 187 183 6 188 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
IL 188 188 5 188 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 189 189 6 189 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 32 ] - - U - - -
ML 190 189 6 192 3 1 1 18 37 -10.256 -0.004 -8.910 -1.742 -1.256 -2.145 1.612
D 191 189 6 192 3 0 0 19 37 -6.174 -1.687 -0.566
IL 192 192 3 192 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 33 ] - - U - - -
ML 193 192 3 195 3 1 1 17 36 -10.256 -0.004 -8.910 -3.740 -2.489 -4.499 1.889
D 194 192 3 195 3 0 0 18 36 -6.174 -1.687 -0.566
IL 195 195 3 195 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 34 ] - - U - - -
ML 196 195 3 198 3 1 1 16 34 -10.256 -0.004 -8.910 -4.066 -3.775 -4.779 1.938
D 197 195 3 198 3 0 0 17 35 -6.174 -1.687 -0.566
IL 198 198 3 198 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 35 ] - - U - - -
ML 199 198 3 201 3 1 1 15 33 -10.256 -0.004 -8.910 -4.066 -3.775 -4.779 1.938
D 200 198 3 201 3 0 0 16 34 -6.174 -1.687 -0.566
IL 201 201 3 201 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 36 ] - - C - - -
ML 202 201 3 204 3 1 1 13 32 -10.256 -0.004 -8.910 -4.164 1.942 -5.091 -3.773
D 203 201 3 204 3 0 0 15 33 -6.174 -1.687 -0.566
IL 204 204 3 204 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 37 ] - - A - - -
ML 205 204 3 207 3 1 1 11 30 -10.256 -0.004 -8.910 1.215 -2.590 0.140 -1.282
D 206 204 3 207 3 0 0 13 32 -6.174 -1.687 -0.566
IL 207 207 3 207 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 38 ] - - u - - -
ML 208 207 3 210 2 1 1 1 1 * 0.000 0.400 -1.122 -0.840 0.733
D 209 207 3 210 2 0 0 0 0 * 0.000
IL 210 210 3 210 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 39 ] - - - - - -
E 211 210 3 -1 0 0 0 0 0
//
HMMER3/f [3.1b3 | July 2016]
NAME E.seed25-1
LENG 66
MAXL 107
ALPH RNA
RF no
MM no
CONS yes
CS yes
MAP no
DATE Sun Jan 19 18:59:14 2020
COM [1] cmbuild E/E.seed25.cm E/E.seed25.stk
COM [2] cmcalibrate -s 1244121171 E/E.seed25.cm
NSEQ 51
EFFN 16.709999
STATS LOCAL MSV -8.8557 0.74459
STATS LOCAL VITERBI -9.7615 0.74459
STATS LOCAL FORWARD -2.9304 0.74459
HMM A C G U
m->m m->i m->d i->m i->i d->m d->d
COMPO 1.23534 1.76071 1.58623 1.10068
1.38629 1.38629 1.38629 1.38629
0.00654 6.33833 5.34920 0.15988 1.91218 0.00000 *
1 1.22722 2.14989 0.85559 1.79961 - g - - (
1.38629 1.38629 1.38629 1.38629
0.00351 7.21555 5.89074 0.19915 1.71161 1.41696 0.27767
2 2.29227 1.29910 2.08982 0.68821 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00354 7.20887 5.88027 0.19915 1.71161 1.42189 0.27609
3 2.32406 1.38717 2.19189 0.61501 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00356 7.20451 5.87343 0.19915 1.71161 1.43564 0.27176
4 2.02807 1.44248 1.67848 0.80876 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00358 7.20146 5.86867 0.19915 1.71161 1.44972 0.26740
5 1.73005 1.29126 2.22571 0.82142 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00359 7.19899 5.86496 0.19915 1.71161 1.46213 0.26363
6 1.84515 1.51707 1.82466 0.77355 - u - - (
1.38629 1.38629 1.38629 1.38629
0.00435 7.06054 5.66102 0.19915 1.71161 1.47251 0.26052
7 1.28246 2.26166 0.93924 1.48040 - g - - (
1.38629 1.38629 1.38629 1.38629
0.00771 6.13453 5.20134 0.39722 1.11531 1.16948 0.37183
8 2.18196 3.46012 3.37002 0.19679 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
9 0.18974 3.31375 2.32671 3.24860 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00752 7.52881 4.96830 0.33410 1.25871 0.00698 4.96776
10 2.40819 3.50919 0.19954 2.79700 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00348 7.21979 5.89743 0.19915 1.71161 1.28316 0.32457
11 4.66494 4.99314 4.45757 0.02819 - U - - <
1.38629 1.38629 1.38629 1.38629
0.00353 7.21025 5.88242 0.19915 1.71161 1.35803 0.29729
12 1.24837 2.08157 0.98469 1.53832 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00356 7.20466 5.87366 0.19915 1.71161 1.40549 0.28136
13 1.86142 2.13668 1.99645 0.52647 - u - - <
1.38629 1.38629 1.38629 1.38629
0.49725 1.01094 3.57829 0.12398 2.14898 1.15035 0.38057
14 0.33949 2.75372 2.63312 1.88175 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00301 7.07103 6.13806 0.49466 0.94104 2.15973 0.12257
15 0.71249 2.31989 1.74527 1.44098 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00301 7.07103 6.13806 0.49466 0.94104 2.15973 0.12257
16 1.02861 2.06903 1.50619 1.22269 - a - - _
1.38629 1.38629 1.38629 1.38629
0.15830 7.07105 1.92721 0.49466 0.94104 0.91340 0.51276
17 1.34038 2.00233 2.44248 0.66109 - u - - _
1.38629 1.38629 1.38629 1.38629
0.01726 6.93626 4.12624 0.49466 0.94104 0.37480 1.16291
18 0.26214 3.39655 2.81569 1.98600 - a - - _
1.38629 1.38629 1.38629 1.38629
0.21732 1.67521 4.82070 0.82871 0.57378 0.01863 3.99209
19 1.16510 2.18424 1.06037 1.47308 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00318 6.97069 6.10411 0.22289 1.61045 1.07184 0.41912
20 1.60896 1.03872 1.97089 1.18200 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00291 6.97807 6.22907 0.22117 1.61738 0.96530 0.47944
21 0.03120 4.90140 4.61563 4.31350 - A - - >
1.38629 1.38629 1.38629 1.38629
0.00251 6.98638 6.44744 0.21864 1.62765 0.80441 0.59303
22 3.13009 0.37685 3.26679 1.46042 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 0.00208 6.17525
23 0.67923 2.37120 1.26008 2.15424 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00419 6.39829 5.98665 0.21943 1.62445 0.43461 1.04275
24 1.84843 1.52129 1.93084 0.73593 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00342 7.23168 5.91624 0.19915 1.71161 1.28578 0.32356
25 1.81610 1.38492 2.00425 0.79356 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00349 7.21810 5.89476 0.19915 1.71161 1.35117 0.29967
26 0.45636 2.73437 1.77134 2.02968 - a - - <
1.38629 1.38629 1.38629 1.38629
0.00353 7.21016 5.88228 0.19915 1.71161 1.39166 0.28590
27 1.58884 1.58242 0.81711 1.90612 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00356 7.20518 5.87448 0.19915 1.71161 1.42027 0.27661
28 1.46848 1.19351 2.05458 1.08345 - u - - <
1.38629 1.38629 1.38629 1.38629
0.00665 6.29803 5.34082 0.39722 1.11531 1.14933 0.38104
29 2.59388 2.25701 2.87322 0.26907 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
30 3.97891 3.11178 4.50501 0.07718 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
31 4.20486 4.00315 4.69907 0.04320 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
32 4.20486 4.00315 4.69907 0.04320 - U - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
33 4.27272 0.04037 4.91527 4.00170 - C - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
34 0.54428 3.18170 1.28941 2.27506 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
35 1.10896 2.16393 1.96846 0.87814 - u - - _
1.38629 1.38629 1.38629 1.38629
0.01060 5.91606 4.84803 0.56970 0.83400 0.06520 2.76270
36 1.54474 2.27526 0.88296 1.30820 - g - - >
1.38629 1.38629 1.38629 1.38629
0.00311 6.98281 6.12993 0.22265 1.61142 1.04906 0.43119
37 2.01375 1.07986 1.51250 1.18250 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00285 6.99726 6.25046 0.22109 1.61768 0.94650 0.49118
38 2.11260 1.97804 2.62346 0.40319 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00249 7.01780 6.44451 0.21895 1.62638 0.80100 0.59580
39 0.93795 2.13336 1.19905 1.66785 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00196 7.04874 6.81906 0.21581 1.63933 0.57560 0.82637
40 0.79241 2.03872 1.42277 1.73723 - a - - >
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 0.00208 6.17525
41 0.21159 3.53246 2.54611 2.48789 - a - - ,
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
42 0.96096 3.32737 0.70311 2.44707 - g - - ,
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
43 1.12275 2.48131 0.93074 1.62597 - g - - ,
1.38629 1.38629 1.38629 1.38629
0.00290 7.10905 6.17607 0.49466 0.94104 1.15530 0.37828
44 1.40157 2.09680 2.30751 0.63218 - u - - ,
1.38629 1.38629 1.38629 1.38629
0.05799 6.39814 2.90625 0.21943 1.62445 0.43461 1.04275
45 1.35148 1.97072 0.67183 2.39675 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00359 7.18636 5.86867 0.19915 1.71161 2.73910 0.06681
46 1.69704 1.47861 1.16072 1.28896 - g - - <
1.38629 1.38629 1.38629 1.38629
0.02894 7.15807 3.58460 0.19915 1.71161 2.62145 0.07548
47 1.54588 1.44584 1.19733 1.38898 - g - - <
1.38629 1.38629 1.38629 1.38629
0.00391 7.11906 5.77856 0.19915 1.71161 2.87291 0.05819
48 1.31251 1.82781 1.14788 1.37523 - g - - <
1.38629 1.38629 1.38629 1.38629
0.16028 6.86691 1.91696 0.19915 1.71161 2.83107 0.06076
49 1.45930 2.05618 1.14481 1.13515 - u - - <
1.38629 1.38629 1.38629 1.38629
1.09875 0.70611 1.75359 1.15213 0.37974 1.57041 0.23314
50 0.76468 2.16206 2.02274 1.24780 - a - - _
1.38629 1.38629 1.38629 1.38629
0.00444 6.68361 5.75063 0.49466 0.94104 0.34730 1.22621
51 1.07803 2.12330 2.05052 0.88811 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00320 7.01092 6.07794 0.49466 0.94104 0.32514 1.28168
52 1.16661 2.16404 2.20910 0.76805 - u - - _
1.38629 1.38629 1.38629 1.38629
0.00295 7.09246 6.15948 0.49466 0.94104 0.48579 0.95505
53 1.20127 1.90066 2.42260 0.77430 - u - - _
1.38629 1.38629 1.38629 1.38629
0.15163 4.25252 2.06781 0.52874 0.89001 0.22873 1.58741
54 1.37663 1.26454 1.83789 1.18401 - u - - >
1.38629 1.38629 1.38629 1.38629
0.01475 6.56990 4.32484 0.27800 1.41592 3.69479 0.02517
55 1.59183 1.25785 1.71944 1.09956 - u - - >
1.38629 1.38629 1.38629 1.38629
0.00658 6.74099 5.22503 0.23939 1.54697 0.74746 0.64164
56 1.50244 1.26638 1.36746 1.42376 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00566 6.83642 5.38916 0.23729 1.55476 1.07215 0.41896
57 1.36353 1.27219 1.40082 1.52495 - c - - >
1.38629 1.38629 1.38629 1.38629
0.00486 6.90357 5.56110 0.23477 1.56425 2.91645 0.05565
58 2.56638 0.75283 1.87385 1.20857 - c - - >
1.38629 1.38629 1.38629 1.38629
0.01768 5.72579 4.24974 0.64712 0.74139 0.01442 4.24647
59 1.60529 1.14737 2.03902 1.04542 - u - - )
1.38629 1.38629 1.38629 1.38629
0.01380 6.85436 4.37023 0.24639 1.52152 1.59254 0.22741
60 1.01813 2.18157 1.27079 1.40546 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00353 6.94938 5.96665 0.22486 1.60261 0.33786 1.24930
61 0.99855 2.39026 1.09776 1.57811 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00333 6.97313 6.03874 0.22399 1.60606 1.13441 0.38804
62 0.96279 1.83769 1.21665 1.81542 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00314 6.98486 6.11544 0.22290 1.61040 1.06417 0.42314
63 0.66051 2.33535 1.30608 2.15625 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00290 7.00137 6.22320 0.22152 1.61595 0.97231 0.47515
64 0.85611 2.66050 1.05606 1.84863 - a - - )
1.38629 1.38629 1.38629 1.38629
0.00258 7.02578 6.38656 0.21970 1.62333 0.84825 0.55890
65 2.07150 1.52339 2.15867 0.61516 - u - - )
1.38629 1.38629 1.38629 1.38629
0.00784 6.33063 5.11081 0.23383 1.56779 0.71585 0.67095
66 0.60019 3.07403 2.35731 1.16995 - a - - :
1.38629 1.38629 1.38629 1.38629
* 0.00000 * 0.30554 1.33456 0.00000 *
//