Here are notebooks of all case studies in our paper, if you need any intermediate files, please contact us.
- spatial_cross_platform: Spatial alignment of Stereo-seq and MERFISH datasets
- visium_xenium: Spatial alignment of Visium and Xenium datasets
- spatial_multi-omics: Spatial alignment of Stereo-seq and spatial-ATAC-seq datasets
- mouse_development: Mouse E11.5 and E12.5 embryo spatial-temporal analysis
- multiple_datasets: 3D structure re-build via multi-datasets alignment