diff --git a/assets/_child-info.qmd b/assets/_child-info.qmd index 2d64091d..3ee4a9dc 100644 --- a/assets/_child-info.qmd +++ b/assets/_child-info.qmd @@ -4,7 +4,7 @@ htmltools::div( style = "margin-bottom:1em;", htmltools::tagList(leaflet(height = 450, width = "auto", elementId = paste0("leaflet-", p)) %>% addTiles(urlTemplate = "http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png") %>% - addAwesomeMarkers(lat = dfr1$lat, lng = dfr1$lon, label = dfr1$label, popup = dfr1$popup, icon = icons) %>% - setView(lat = dfr1$lat[1], lng = dfr1$lon[1], zoom = 13)) + addAwesomeMarkers(lat = dfr2$lat, lng = dfr2$lon, label = dfr2$label, popup = dfr2$popup, icon = icons) %>% + setView(lat = dfr2$lat[1], lng = dfr2$lon[1], zoom = 13)) ) ``` \ No newline at end of file diff --git a/home_info.qmd b/home_info.qmd index 5d80afe5..90355367 100644 --- a/home_info.qmd +++ b/home_info.qmd @@ -32,7 +32,8 @@ for (i in seq_along(loc)) { dfr1 <- dfr[dfr$location %in% p, , drop = FALSE] dfr1$address <- gsub(";|; ", "
", dfr1$address) dfr1$popup <- gsub(";|; ", "
", dfr1$popup) - icons <- awesomeIcons(icon = dfr1$marker_icon, markerColor = dfr1$marker_colour, iconColor = "#FFFFFF", library = "fa") + dfr2 <- dfr1[complete.cases(dfr1$lat, dfr1$lon), ] + icons <- awesomeIcons(icon = dfr2$marker_icon, markerColor = dfr2$marker_colour, iconColor = "#FFFFFF", library = "fa") if(p != "online") { cat(knitr::knit_child(input = "assets/_child-info.qmd", envir = environment(), quiet = TRUE)) cat("\n") diff --git a/info.xlsx b/info.xlsx index f08de79f..13899d44 100644 Binary files a/info.xlsx and b/info.xlsx differ diff --git a/schedule.xlsx b/schedule.xlsx index 92a11072..ed5e959a 100644 Binary files a/schedule.xlsx and b/schedule.xlsx differ diff --git a/topics/other/lab_connect_pdc.qmd b/topics/other/lab_connect_pdc.qmd index 4f195ff2..13836e86 100644 --- a/topics/other/lab_connect_pdc.qmd +++ b/topics/other/lab_connect_pdc.qmd @@ -1,6 +1,6 @@ --- title: "Connecting to PDC" -description: "Connecting to PDC through SSH and GUI (Browser and ThinLinc)" +subtitle: "Connecting to PDC through SSH and GUI (Browser and ThinLinc)" date: "" format: html --- @@ -135,5 +135,4 @@ There is a ThinLinc server running at one of the login nodes which allows users 6. When you are done with working with the remote desktop, press the power icon {{< fa power-off >}} in the top-right corner of the screen and select `Log Out`. -For more detailed instruction, please look here: https://intra.kth.se/en/2.79567/support/documents/login/interactive_hpc.html - +For more detailed instructions, please look here: https://www.pdc.kth.se/support/documents/login/interactive_hpc.html diff --git a/topics/other/lab_connect_uppmax.qmd b/topics/other/lab_connect_uppmax.qmd index ff3e7407..803e2a7e 100644 --- a/topics/other/lab_connect_uppmax.qmd +++ b/topics/other/lab_connect_uppmax.qmd @@ -1,6 +1,6 @@ --- title: "Connecting to UPPMAX" -description: "Connecting to UPPMAX through SSH and GUI (Browser and ThinLinc)" +subtitle: "Connecting to UPPMAX through SSH and GUI (Browser and ThinLinc)" date: "" format: html --- diff --git a/topics/other/lab_troubleshooting.qmd b/topics/other/lab_troubleshooting.qmd index 9f80d0a5..1b582072 100644 --- a/topics/other/lab_troubleshooting.qmd +++ b/topics/other/lab_troubleshooting.qmd @@ -1,6 +1,6 @@ --- title: "Status & Troubleshooting" -description: "Utility commands/scripts, troubleshooting, tips and suggestions." +subtitle: "Utility commands/scripts, troubleshooting, tips and suggestions." date: "" sidebar: false format: html @@ -15,7 +15,7 @@ id_project <- yaml::read_yaml(here("_quarto.yml"))$id_project ## Status -Useful commands for monitoring status and user activity on UPPMAX. +Useful commands for monitoring status and user activity on HPC. ### List jobs @@ -160,7 +160,8 @@ finger username - Open the Xquartz terminal and connect to Uppmax - In my recent macos (10.xxx) , x-forwarding only works if I explicitly run the Xquartz terminal -`ssh -XY username@rackham.uppmax.uu.se` +`ssh -XY username@{{< meta url_cluster >}}` +`ssh -XY username@{{< meta url_cluster_backup >}}` Also use this when logging in to the compute node! @@ -180,7 +181,7 @@ First ensure X-forwarding works, then run `firefox --no-remote filename.html` ### SCP fails with * -Sometimes students have problems to download files with SCP when there is a `*` in the end of the line. For example; `scp user@rackham.uppmax.uu.se:/proj/bla/HG00097.bam* .`. It needs to be changed to `scp user@rackham.uppmax.uu.se:/proj/bla/HG00097.bam\* .`. +Sometimes students have problems to download files with SCP when there is a `*` in the end of the line. For example; `scp user@{{< meta url_cluster >}}:~/ngsintro/HG00097.bam* .`. It needs to be changed to `scp user@{{< meta url_cluster >}}:~/ngsintro/HG00097.bam\* .`. ### Thinlinc @@ -212,4 +213,8 @@ As documented [here](https://github.com/XQuartz/XQuartz/issues/31), run: defaults write org.xquartz.X11 enable_render_extension 0 ``` +### Thinlinc client installs in Swedish + +There seems to be no option to change language in the app. So one will have to reinstall with some changes. In region settings, if English is set as primary and Swedish as secondary, it still installs in Swedish. The solution is to remove Swedish from the list completely and then reinstall. + ***