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question about "mestimate" #1

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xutongran opened this issue Jun 15, 2022 · 1 comment
Open

question about "mestimate" #1

xutongran opened this issue Jun 15, 2022 · 1 comment

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@xutongran
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Hello! You've done a really good job of implementing soft clustering of data. When I use the package you developed, I get a little confused when I execute the following code. Do you have any suggestions for setting the parameter value requirements for the "mestimate"value
mfuzz_cluster <- mfuzz(mfuzz_class,
centers = clus_num,#聚类数
m = mestimate(mfuzz_class)#模糊化参数
)

@MatthiasFutschik
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MatthiasFutschik commented Jun 15, 2022

mestimate is a function which returns a value for the fuzzification parameter m based on the dimension of the expression matrix. The input is an ExpressionSet object. Please see the help page in R where you find the example for the function and some more background info

data(yeast)
yeastF <- filter.NA(yeast)
yeastF <- fill.NA(yeastF)
yeastF <- standardise(yeastF)
m1 <- mestimate(yeastF)
m1 # around 1.15

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