Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Analyze human 10x v3 dataset: scRNAseqSystemicComparison #853

Open
jychien opened this issue Nov 25, 2019 · 1 comment
Open

Analyze human 10x v3 dataset: scRNAseqSystemicComparison #853

jychien opened this issue Nov 25, 2019 · 1 comment
Labels
🚫blocked A ticket is blocked by something ticketless data ops

Comments

@jychien
Copy link

jychien commented Nov 25, 2019

Project title: Systematic comparative analysis of single cell RNA-sequencing methods
Project short name: scRNAseqSystemicComparison
Project UUID: 88ec040b-8705-4f77-8f41-f81e57632f7d
Submission UUID: d1610c4a-76c6-4b69-af63-c74af869fa75
Metadata: human, 10x v3
Bundles: 1 human 10x v3 primary bundle

This project is currently blocked by at Matrix Service for multiple reasons:

  1. Generation of barcodes.tsv: HumanCellAtlas/matrix-service/issues/427
  2. AUDR of metadata, which includes fields being used by Matrix Service: HumanCellAtlas/hca-data-wrangling/issues/329

@HumanCellAtlas/data-ops

@jychien jychien added the 🚫blocked A ticket is blocked by something ticketless label Nov 25, 2019
@samanehsan
Copy link
Contributor

The new Optimus pipeline that supports 10x v2 & v3 chemistry also changes the zarr outputs, so we would need to re-analyze the 10x v2 data in order to put it in the same matrix as the 10x v3 data. However, we do not have the ability to create new versions of existing analysis bundles so this ticket is blocked until then.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
🚫blocked A ticket is blocked by something ticketless data ops
Projects
None yet
Development

No branches or pull requests

2 participants