From 80747d1825aa23ce568f43bbb177248096221c43 Mon Sep 17 00:00:00 2001 From: Tim Ermilov Date: Thu, 14 Apr 2022 13:37:42 +0200 Subject: [PATCH] Prepara public v1.0 release --- .github/workflows/release.yml | 26 + .github/workflows/test.yml | 17 + .gitignore | 5 + README.md | 63 + docs/Basics.md | 302 ++ package-lock.json | 4764 +++++++++++++++++ package.json | 45 + src/QueryManager.ts | 40 + src/client.ts | 97 + src/exchanges/http.ts | 105 + src/exchanges/parse.ts | 82 + src/exchanges/util.ts | 8 + src/index.ts | 10 + src/react.tsx | 5 + src/react/context.tsx | 26 + src/react/query.ts | 55 + src/react/update.ts | 45 + src/react/util.ts | 38 + src/sparql/parser.ts | 10 + src/sparql/replace.ts | 242 + src/sparql/results.ts | 149 + src/sparql/tag.ts | 38 + src/util/url-tag.ts | 33 + .../__snapshots__/sparql-replace.test.ts.snap | 509 ++ test/__snapshots__/sparql-tag.test.ts.snap | 8 + test/client.test.ts | 586 ++ test/fixtures/dbpedia.ts | 181 + .../queries/inserts/insert-data.sparql | 10 + test/fixtures/queries/sparql/all.sparql | 7 + .../queries/sparql/artists-ghent.sparql | 21 + .../sparql/ask-in-anonymous-node.sparql | 6 + test/fixtures/queries/sparql/blanks.sparql | 17 + test/fixtures/queries/sparql/bsbm3.sparql | 18 + test/fixtures/queries/sparql/bsbm4.sparql | 32 + test/fixtures/queries/sparql/bsbm8.sparql | 24 + .../sparql/construct-extra-semicolon.sparql | 9 + .../queries/sparql/fedbench-cd1.sparql | 9 + .../inverse-paths-anonymous-node.sparql | 14 + test/fixtures/queries/sparql/lists.sparql | 18 + .../queries/sparql/optional-subquery.sparql | 4 + test/fixtures/queries/sparql/optional.sparql | 11 + .../queries/sparql/sparql-10-1a.sparql | 13 + test/fixtures/queries/sparql/sparql-12.sparql | 15 + .../queries/sparql/sparql-13-2-3.sparql | 15 + .../queries/sparql/sparql-13-3-3.sparql | 26 + .../queries/sparql/sparql-18-a.sparql | 13 + .../queries/sparql/sparql-5-2b.sparql | 8 + .../fixtures/queries/sparql/sparql-6-1.sparql | 8 + 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21 + tsconfig.tsbuildinfo | 1 + types/client.d.ts | 61 + types/exchange.d.ts | 28 + vite.config.ts | 5 + 75 files changed, 8801 insertions(+) create mode 100644 .github/workflows/release.yml create mode 100644 .github/workflows/test.yml create mode 100644 .gitignore create mode 100644 README.md create mode 100644 docs/Basics.md create mode 100644 package-lock.json create mode 100644 package.json create mode 100644 src/QueryManager.ts create mode 100644 src/client.ts create mode 100644 src/exchanges/http.ts create mode 100644 src/exchanges/parse.ts create mode 100644 src/exchanges/util.ts create mode 100644 src/index.ts create mode 100644 src/react.tsx create mode 100644 src/react/context.tsx create mode 100644 src/react/query.ts create mode 100644 src/react/update.ts create mode 100644 src/react/util.ts create mode 100644 src/sparql/parser.ts create mode 100644 src/sparql/replace.ts create mode 100644 src/sparql/results.ts create mode 100644 src/sparql/tag.ts create mode 100644 src/util/url-tag.ts create mode 100644 test/__snapshots__/sparql-replace.test.ts.snap create mode 100644 test/__snapshots__/sparql-tag.test.ts.snap create mode 100644 test/client.test.ts create mode 100644 test/fixtures/dbpedia.ts create mode 100644 test/fixtures/queries/inserts/insert-data.sparql create mode 100644 test/fixtures/queries/sparql/all.sparql create mode 100644 test/fixtures/queries/sparql/artists-ghent.sparql create mode 100644 test/fixtures/queries/sparql/ask-in-anonymous-node.sparql create mode 100644 test/fixtures/queries/sparql/blanks.sparql create mode 100644 test/fixtures/queries/sparql/bsbm3.sparql create mode 100644 test/fixtures/queries/sparql/bsbm4.sparql create mode 100644 test/fixtures/queries/sparql/bsbm8.sparql create mode 100644 test/fixtures/queries/sparql/construct-extra-semicolon.sparql create mode 100644 test/fixtures/queries/sparql/fedbench-cd1.sparql create mode 100644 test/fixtures/queries/sparql/inverse-paths-anonymous-node.sparql create mode 100644 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test/sparql-tag.test.ts create mode 100644 test/url-tag.test.ts create mode 100644 tsconfig.json create mode 100644 tsconfig.tsbuildinfo create mode 100644 types/client.d.ts create mode 100644 types/exchange.d.ts create mode 100644 vite.config.ts diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml new file mode 100644 index 0000000..2953016 --- /dev/null +++ b/.github/workflows/release.yml @@ -0,0 +1,26 @@ +name: Release + +on: + release: + types: [published] + +jobs: + release: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Use Node.js 16 + uses: actions/setup-node@v3 + with: + node-version: '16.x' + registry-url: 'https://registry.npmjs.org' + - name: install + run: npm ci + - name: test + run: npm run test:ci + - name: build + run: npm run build + - name: publish + run: npm publish --access public + env: + NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }} diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml new file mode 100644 index 0000000..ec2f3cb --- /dev/null +++ b/.github/workflows/test.yml @@ -0,0 +1,17 @@ +name: Build + +on: [push, pull_request] + +jobs: + test: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Use Node.js 16 + uses: actions/setup-node@v3 + with: + node-version: 16 + - name: install + run: npm ci + - name: test + run: npm run test:ci diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..64837b8 --- /dev/null +++ b/.gitignore @@ -0,0 +1,5 @@ +.swc +dist/ +dist-map +coverage/ +node_modules/ diff --git a/README.md b/README.md new file mode 100644 index 0000000..c88fb21 --- /dev/null +++ b/README.md @@ -0,0 +1,63 @@ +
+

@databorg/client

+ +
+ + + Highly versatile SPARQL client for modern age + +
+ +## Features + +- **One package** to get a working SPARQL client in javascript or React +- Powerful **templating** for queries [via placeholder variables](./docs/Basics.md#templating) +- Client-level [prefix management](./docs/Basics.md#setting-up-the-client) +- Automated [results parsing](./docs/Basics.md#results-parsing) +- Query validation out-of-the-box +- Fully **customisable** behaviour [via "exchanges"](./docs/Basics.md#exchanges) + +While SPARQL is an great language, client libraries today typically come with a limited set of features and offload the additional work to developers who are using them. +We aim to create a more powerful and developer-friendly out-of-the-box experience instead. + +## Installation + +```sh +npm install @databorg/client +``` + +## Basic usage + +```js +import { DataborgClient, url } from '@databorg/client'; + +// create new client +const client = new DataborgClient({ + queryEndpoint: 'https://dbpedia.org/sparql', +}); + +// execute a query +const result = await client.query({ + query: `SELECT ?p ?o WHERE { ?uri ?p ?label } LIMIT 5`, + variables: { + uri: url`http://dbpedia.org/ontology/deathDate`, + label: 'Hello world!', + }, +}); + +// execute an update +const result = await client.update({ + query: `INSERT DATA { var:uri a dbpedia:Resource . }`, + variables: { uri: url`http://dbpedia.org/Test` }, +}); +``` + +## Documentation + +The documentation contains everything you need to know about `@databorg/client`: + +- **[Basics](./docs/Basics.md)** — contains the "Getting Started" guide and all you need to know when first using `@databorg/client`. + +## License + +Licensed under MIT. diff --git a/docs/Basics.md b/docs/Basics.md new file mode 100644 index 0000000..193b5f5 --- /dev/null +++ b/docs/Basics.md @@ -0,0 +1,302 @@ +# Basics + +`@databorg/client` is a highly versatile SPARQL client for modern age. It's built to be both easy to use for newcomers to SPARQL, and extensible, to grow to support large-scale applications and highly customized SPARQL infrastructure. + +## Setting up the Client + +The `@databorg/client` and package exports a method called `createClient` which we can use to create the SPARQL client. This central Client manages all of our GraphQL requests and results. + +```js +import { DataborgClient } from '@databorg/client'; + +// create new client +const client = new DataborgClient({ + queryEndpoint: 'https://dbpedia.org/sparql', + updateEndpoint: 'https://dbpedia.org/update', // optional, uses queryEndpoint by default + headers: { + Authorization: 'Bearer TOKEN', + }, + prefixes: { + foaf: 'http://xmlns.com/foaf/0.1/', + }, +}); +``` + +At the bare minimum we'll need to pass an endpoint URL when we create a client to get started. + +Another common options include `headers` and `prefixes`. +Header option allows us to customize the request headers for all requests, while prefixes option allows us to define custom prefixes used within all queries. + +## Queries and Updates + +When you're using `@databorg/client` to send queries or updates - the `client.query` and `client.update` methods allow you to do just that. + +```js +// execute a query +const result = await client.query({ + query: `SELECT ?p WHERE { ?uri ?p ?label } LIMIT 5`, + variables: { + uri: url`http://dbpedia.org/ontology/deathDate`, + label: 'Hello world!', + }, +}); + +// execute an update +const result = await client.update({ + query: sparql`INSERT DATA { var:uri a dbpedia:Resource . }`, + variables: { uri: url`http://dbpedia.org/Test` }, +}); +``` + +## SPARQL and URL Tags + +A notable utility functions are the `sparql` and `url` tagged template literal function. + +Wherever `@databorg/client` accepts a query document, we can either pass a string or a `SparqlQuery` document. +`sparql` is a utility that allows a `SparqlQuery` to be created directly. + +In most examples we may have passed a string to define a query document, like so: + +```js +const basicQuery = ` + SELECT ?s ?p ?o WHERE { + ?s ?p ?o . + } +`; +``` + +We may also use the `sparql` tag function to create a `SparqlQuery` directly: + +```js +import { sparql } from '@databorg/client'; + +const basicQuery = sparql` + SELECT ?s ?p ?o WHERE { + ?s ?p ?o . + } +`; +``` + +The `url` is an utility that allows us to convert a string into a `NamedNode` used in query (i.e. when you want to use value as URI, not as a literal). + +```js +import { url } from '@databorg/client'; + +// execute an update +const result = await client.update({ + query: `INSERT DATA { var:uri a dbpedia:Resource . }`, + variables: { + // using url tagged template literal will ensure that the value is a NamedNode + // and is used and an URI, not a literal + uri: url`http://dbpedia.org/Test`, + }, +}); +``` + +## React + +This section covers how to install and setup `@databorg/client`, as well as query and update data, with React. + +First, setup the client as described [above](#setting-up-the-client). +Once the client is created, you will need to provide it to your React app via the Context API. +This may be done with the help of the `DataborgProvider` export. + +```js +import { DataborgProvider } from '@databorg/client'; + +// wrap your app in a provider +// this will pass the client to all components +const App = ({ children }) => ( + {children} +); +``` + +### Queries + +Here we have implemented our first SPARQL query to fetch all triples for `http://example.com` resource. +We see that useQuery accepts query and options, and returns an object with results. +The object we then get in return contains a result object, an error object, loading state indicator and a re-execute function. + +```js +// execute a query +const MyQueryComponent = () => { + const { data, error, loading, reexecuteQuery } = useQuery( + `SELECT ?p ?o WHERE { ?uri ?p ?o }`, + { + variables: { uri: url`http://example.com` }, + } + ); + + // reexecute the query when needed + useEffect(() => reexecuteQuery(), [someCondition]); + + if (error) return
Error: {error.message}
; + if (loading) return
Loading...
; + + return
{JSON.stringify(data)}
; +}; +``` + +### Updates + +`@databorg/client` offers a `useUpdate` hook to execute update queries. + +Contrary to the `useQuery` output, `useUpdate` returns an tuple. +The first item in the tuple again contains an update function, while second - loading state and error. + +Unlike the `useQuery` hook, the `useUpdate` hook doesn't execute automatically. +To execute our update we _have_ to call the execute function — `updateResource` in our example — which is the first item in the tuple. + +```js +// execute an update +const MyUpdateComponent = () => { + const [updateResource, { loading, error }] = useUpdate( + `INSERT DATA { var:uri a dbpedia:Resource . }` + ); + + const runUpdate = () => + updateResource({ + variables: { uri: url`http://dbpedia.org/Test` }, + }); + + if (error) return
Error: {error.message}
; + if (loading) return
Loading...
; + + return ; +}; +``` + +## Templating + +`@databorg/client` comes with powerful query template engine. +It allows us to define a query template and pass it variables, building new queries on-demand. +There are two ways to defined templated variables - one for queries and one for updates. + +In queries, we can simply use SPARQL variables, like so: + +```js +const result = await client.query({ + query: `SELECT ?p WHERE { ?uri ?p ?label } LIMIT 5`, + variables: { + uri: url`http://dbpedia.org/ontology/deathDate`, + label: 'Hello world!', + }, +}); +``` + +This will result in the following final query: + +``` +SELECT ?p WHERE { ?p "Hello world!" } LIMIT 5 +``` + +Since one cannot use SPARQL variables in updates, `@databorg/client` introduces a special `var:` prefix for variables in update queries, e.g.: + +```js +const result = await client.update({ + query: `INSERT DATA { var:uri a dbpedia:Resource . }`, + variables: { uri: url`http://dbpedia.org/Test` }, +}); +``` + +This will result in the following final query: + +``` +INSERT DATA { a dbpedia:Resource . } +``` + +## Results parsing + +By default, `@databorg/client` can parse two different types of results: + +- SPARQL JSON results +- CONSTRUCT query results + +Type of response is detected automatically based on response headers. + +Client also provides a way to switch between three different kinds of parsing for SPARQL JSON results: + +1. Simple parsing (used by default) - parses SPARQL JSON response and converts each row into an object with properties mapped to variable names, e.g.: + + ```js + const result = await client.update({ + query: `SELECT ?p ?o WHERE { ?s ?p ?o }`, + }); + // will result in following + const result = [ + { + o: 'owl:FunctionalProperty', + p: 'rdf:type', + }, + ]; + ``` + +2. Property parsing - parses SPARQL JSON response and converts all results into an object with properties nested based on provided structure, e.g.: + ```js + const result = await client.update({ + query: `SELECT ?s ?p ?o WHERE { ?s ?p ?o }`, + options: { + parsing: { + type: 'properties', + subjectVariable: 's', + predicateVariable: 'p', + objectVariable: 'o', + }, + }, + }); + // will result in following + const result = { + 'dbo:averageAnnualGeneration': { + 'rdf:type': 'owl:FunctionalProperty', + }, + 'dbo:birthDate': { + 'rdf:type': 'owl:FunctionalProperty', + }, + }; + ``` +3. Custom row-based parsing - parses SPARQL JSON response using provided parsing function, e.g.: + ```js + const result = await client.update({ + query: `SELECT ?s ?p ?o WHERE { ?s ?p ?o }`, + options: { + parsing: { + type: 'custom', + rowProcessor: (row, result) => { + const subject = row.s.value; + const predicate = row.p.value; + const object = row.o.value; + result.push([subject, predicate, object]); + }, + }, + }, + }); + // will result in following + const result = [ + [ + 'http://dbpedia.org/ontology/deathDate', + 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type', + 'http://www.w3.org/2002/07/owl#FunctionalProperty', + ], + [ + 'http://dbpedia.org/ontology/birthDate', + 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type', + 'http://www.w3.org/2002/07/owl#FunctionalProperty', + ], + ]; + ``` + +## Exchanges + +The client itself doesn't actually know what to do with any of the operations (be in `query` or `update`). +Instead, it sends them through "exchanges". +Exchanges are akin to [middleware in Redux](https://redux.js.org/advanced/middleware) and have access to all operations and all results. +Multiple exchanges are chained to process our operations and to execute logic on them, one of them being the httpExchange, which as the name implies sends our requests to our HTTP API. + +The default set of exchanges that `@databorg/client` contains and applies to a client are: + +- HttpExchange: Sends an operation to the HTTP API using fetch and adds results to the output stream +- ParseExchange: Parses the response from the SPARQL server and adds it to the output stream + +When we don't pass the `exchanges` option manually to our client then these are the ones that will be applied. + +Exchanged determine a lot of the logic of the client, taking care of things like sending requests to our API, parsing, deduplication, caching, etc. diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..9406ac8 --- /dev/null +++ b/package-lock.json @@ -0,0 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"dist/index.d.ts", + "license": "MIT", + "scripts": { + "test": "vitest watch", + "test:ci": "vitest run --coverage", + "build:declaration": "tsc --emitDeclarationOnly --declaration --declarationDir dist", + "build:compile": "esbuild `find src \\( -name '*.ts*' \\)` --format=cjs --outdir=./dist", + "build": "npm run build:declaration && npm run build:compile" + }, + "keywords": [ + "sparql", + "rdf", + "client", + "sparql client", + "sparql-client", + "databorg" + ], + "author": "Tim Ermilov (http://databorg.ai/)", + "dependencies": { + "hash.js": "^1.1.7", + "jsonld": "^5.2.0", + "n3": "^1.13.0", + "sparqljs": "^3.5.1" + }, + "devDependencies": { + "@testing-library/react": "^13.0.0", + "@testing-library/react-hooks": "^7.0.2", + "@types/node": "^17.0.10", + "@types/sparqljs": "^3.1.3", + "c8": "^7.11.0", + "esbuild": "^0.14.32", + "isomorphic-unfetch": "^3.1.0", + "jsdom": "^19.0.0", + "nock": "^13.2.2", + "react": "^18.0.0", + "react-dom": "^18.0.0", + "typescript": "^4.5.4", + "vitest": "^0.8.4" + } +} diff --git a/src/QueryManager.ts b/src/QueryManager.ts new file mode 100644 index 0000000..57c122d --- /dev/null +++ b/src/QueryManager.ts @@ -0,0 +1,40 @@ +import type { SparqlQuery } from 'sparqljs'; +import type { QueryOptions } from 'types/client'; +import { sparqlQueryToString } from './sparql/parser'; +import { sparqlWithSubstitution } from './sparql/replace'; +import { sparql } from './sparql/tag'; + +export class QueryManager { + #prefixes: Record; + + constructor({ prefixes }) { + this.#prefixes = prefixes; + } + + #getPrefixes(): string { + return Object.entries(this.#prefixes) + .map(([prefix, uri]) => `PREFIX ${prefix}: <${uri}>`) + .join('\n'); + } + + transform({ query, variables = {} }: QueryOptions): SparqlQuery { + let queryObject; + // parse query string if needed + if (typeof query === 'string') { + queryObject = sparql(`${this.#getPrefixes()}\n${query}`); + } else { + queryObject = query; + } + // apply substitutions + const queryWithVars = sparqlWithSubstitution({ + query: queryObject, + variables, + }); + return queryWithVars; + } + + queryToString(query: SparqlQuery): string { + const queryString = sparqlQueryToString(query); + return queryString; + } +} diff --git a/src/client.ts b/src/client.ts new file mode 100644 index 0000000..61e2f85 --- /dev/null +++ b/src/client.ts @@ -0,0 +1,97 @@ +import type { + DataborgClientOptions, + QueryOptions, + UpdateOptions, +} from 'types/client'; +import type { DataborgExchange, ExchangeResult } from 'types/exchange'; +import { HttpExchange } from './exchanges/http'; +import { ParseExchange } from './exchanges/parse'; +import { exchangesFrom } from './exchanges/util'; +import { QueryManager } from './QueryManager'; + +export class DataborgClient { + #queryEndpoint: string; + #updateEndpoint: string; + #headers: Record; + #exchange: DataborgExchange; + #queryManager: QueryManager; + + name: string; + version: string; + prefixes: Record; + + constructor({ + queryEndpoint, + updateEndpoint, + headers, + prefixes, + name, + version, + exchange, + }: DataborgClientOptions) { + this.#queryEndpoint = queryEndpoint; + this.#updateEndpoint = updateEndpoint ?? queryEndpoint; + this.#headers = headers ?? {}; + this.prefixes = prefixes ?? {}; + + // set public client properties + this.name = name ?? 'DataborgClient'; + this.version = version ?? '1.0.0'; + + // init query manager + this.#queryManager = new QueryManager({ prefixes: this.prefixes }); + + // init exchange + if (exchange) { + // use provided exchange if given + this.#exchange = exchange; + } else { + // otherwise use default http exchange with parse exchange in chain + const httpEx = new HttpExchange({ + queryEndpoint: this.#queryEndpoint, + updateEndpoint: this.#updateEndpoint, + headers: this.#headers, + }); + const parseEx = new ParseExchange(); + this.#exchange = exchangesFrom(httpEx, parseEx); + } + } + + async query({ + query, + variables, + options = {}, + }: QueryOptions): Promise { + // transform query, substitute vars, validate, etc + const queryWithVars = this.#queryManager.transform({ query, variables }); + // execute via exchange + const results = await this.#exchange.execute({ + client: this, + queryManager: this.#queryManager, + query: queryWithVars, + options, + }); + return results; + } + + async update({ + query, + variables, + options = {}, + }: UpdateOptions): Promise { + // transform query, substitute vars, validate, etc + const updateWithVars = this.#queryManager.transform({ + query, + variables, + }); + // execute via exchange + const results = await this.#exchange.execute({ + client: this, + queryManager: this.#queryManager, + query: updateWithVars, + update: true, + options, + }); + return results; + } +} diff --git a/src/exchanges/http.ts b/src/exchanges/http.ts new file mode 100644 index 0000000..6241fb6 --- /dev/null +++ b/src/exchanges/http.ts @@ -0,0 +1,105 @@ +import type { SPARQLResults } from 'types/client'; +import type { + DataborgExchange, + ExchangeRequest, + ExchangeResult, +} from 'types/exchange'; + +/** + * Basic HTTP exchange. + * Executes SPARQL queries over HTTP. + */ +export class HttpExchange implements DataborgExchange { + #queryEndpoint: string; + #updateEndpoint: string; + #headers: Record; + #nextExchange: DataborgExchange; + + constructor({ + queryEndpoint, + updateEndpoint, + headers, + }: { + queryEndpoint: string; + updateEndpoint?: string; + headers?: Record; + }) { + this.#queryEndpoint = queryEndpoint; + this.#updateEndpoint = updateEndpoint ?? queryEndpoint; + this.#headers = headers ?? {}; + } + + async #executeQuery({ query, endpoint, update = false }): Promise<{ + result: SPARQLResults | string | null; + headers: Record; + }> { + try { + const res = await fetch(endpoint, { + method: 'POST', + headers: { + Accept: 'application/json', + 'Content-Type': update + ? 'application/sparql-update' + : 'application/sparql-query', + ...this.#headers, + }, + body: query, + }); + + // get headers as object + const headers = Object.fromEntries(res.headers.entries()); + // if empty response - just return + if (res.status === 204) { + return { result: null, headers }; + } + + // if content type is json - return json + if (headers['content-type']?.includes('json')) { + const json = await res.json(); + return { result: json as SPARQLResults, headers }; + } + + // otherwise return plain text + const text = await res.text(); + return { result: text, headers }; + } catch (error) { + // console.error(error); + throw error; + } + } + + async execute({ + client, + queryManager, + query, + update = false, + options, + }: ExchangeRequest): Promise { + const queryString = queryManager.queryToString(query); + + const { result, headers } = await this.#executeQuery({ + endpoint: update ? this.#updateEndpoint : this.#queryEndpoint, + query: queryString, + update, + }); + // if last exchange - just return results + if (!this.#nextExchange) { + return { query, update, response: result, responseHeaders: headers }; + } + // if there is next exchange - execute it + return this.#nextExchange.execute({ + client, + queryManager, + query, + update, + response: result, + responseHeaders: headers, + options, + }); + } + + concat(exchange: DataborgExchange): DataborgExchange { + this.#nextExchange = exchange; + return this; + } +} diff --git a/src/exchanges/parse.ts b/src/exchanges/parse.ts new file mode 100644 index 0000000..9d5ed38 --- /dev/null +++ b/src/exchanges/parse.ts @@ -0,0 +1,82 @@ +import type { + DataborgExchange, + ExchangeRequest, + ExchangeResult, +} from 'types/exchange'; +import { parseSparqlResults, parseTextResults } from '../sparql/results'; + +/** + * Result parse exchange. + * Parses results of SPARQL queries. + * Understands SPARQL JSON as well as graph (CONSTRUCT) query results. + * On parsing failure, returns original results. + */ +export class ParseExchange implements DataborgExchange { + #nextExchange: DataborgExchange; + + async execute({ + client, + queryManager, + query, + update, + response, + responseHeaders, + options, + }: ExchangeRequest): Promise { + if (!response) { + return { query, update, response, responseHeaders }; + } + // if result is empty - just return + if (typeof response !== 'string' && Object.keys(response).length === 0) { + return { query, update, response, responseHeaders }; + } + // if user requested raw results - return them + if (options.rawResults) { + return { query, update, response, responseHeaders }; + } + + let results; + + // parse as string + try { + if (typeof response === 'string') { + // console.log('resp is string', response); + results = await parseTextResults( + response, + client.prefixes, + options.frame + ); + } else { + // otherwise - apply post-processing + results = parseSparqlResults(response, options.parsing); + // append original response as `_raw` property + if (typeof results === 'object' && options.includeRawResults) { + results._raw = response; + } + } + } catch (error) { + // append raw response to error + error.response = response; + throw error; + } + + if (!this.#nextExchange) { + return { query, update, response: results, responseHeaders }; + } + + return this.#nextExchange.execute({ + client, + queryManager, + query, + update, + response: results, + responseHeaders, + options, + }); + } + + concat(exchange: DataborgExchange): DataborgExchange { + this.#nextExchange = exchange; + return this; + } +} diff --git a/src/exchanges/util.ts b/src/exchanges/util.ts new file mode 100644 index 0000000..7f72477 --- /dev/null +++ b/src/exchanges/util.ts @@ -0,0 +1,8 @@ +import { DataborgExchange } from 'types/exchange'; + +export const exchangesFrom = ( + ...exchanges: DataborgExchange[] +): DataborgExchange => { + const result = exchanges.reduce((prev, curr) => prev.concat(curr)); + return result; +}; diff --git a/src/index.ts b/src/index.ts new file mode 100644 index 0000000..5473556 --- /dev/null +++ b/src/index.ts @@ -0,0 +1,10 @@ +export const InMemoryCache = {}; + +export * from './client'; +export * from './exchanges/http'; +export * from './exchanges/parse'; +export * from './exchanges/util'; +export * from './QueryManager'; +export * from './react'; +export * from './sparql/tag'; +export * from './util/url-tag'; diff --git a/src/react.tsx b/src/react.tsx new file mode 100644 index 0000000..1b53347 --- /dev/null +++ b/src/react.tsx @@ -0,0 +1,5 @@ +import { DataborgProvider, useClient } from './react/context'; +import { useQuery } from './react/query'; +import { useUpdate } from './react/update'; + +export { DataborgProvider, useClient, useQuery, useUpdate }; diff --git a/src/react/context.tsx b/src/react/context.tsx new file mode 100644 index 0000000..a90ea69 --- /dev/null +++ b/src/react/context.tsx @@ -0,0 +1,26 @@ +import * as React from 'react'; +import { createContext } from 'react'; +import type { DataborgClient } from '../client'; + +export const DataborgContext = createContext( + undefined +); + +export const DataborgProvider = ({ + children, + client, +}: { + children: React.ReactElement; + client: DataborgClient; +}) => { + return ( + + {children} + + ); +}; + +export const useClient = (): DataborgClient => { + const client = React.useContext(DataborgContext); + return client; +}; diff --git a/src/react/query.ts b/src/react/query.ts new file mode 100644 index 0000000..3143c58 --- /dev/null +++ b/src/react/query.ts @@ -0,0 +1,55 @@ +import { useContext, useEffect, useState } from 'react'; +import type { DataborgQueryResult, QueryVariables } from 'types/client'; +import type { ExchangeExecuteOptions } from 'types/exchange'; +import { DataborgContext } from './context'; +import { useRequest } from './util'; + +type UseQueryOptions = { + variables: QueryVariables; + skip?: boolean; + options: ExchangeExecuteOptions; +}; + +export const useQuery = (query, options?: UseQueryOptions) => { + const client = useContext(DataborgContext); + const [loading, setLoading] = useState(false); + const [error, setError] = useState(null); + const [data, setData] = useState(); + const request = useRequest({ query, ...options }); + + const executeQuery = async () => { + setLoading(true); + try { + const { response } = await client.query(request); + setData(response); + setLoading(false); + } catch (err) { + setError(err); + setLoading(false); + } + }; + + // reset state on new query + useEffect(() => { + setError(null); + setData(undefined); + }, [request]); + + useEffect(() => { + if (!client) { + return; + } + // do not continue execution if error or loading + if (error || loading) { + return; + } + // do not continue execution if user provided skip + if (options?.skip) { + return; + } + + executeQuery(); + }, [request]); + + return { error, data, loading, reexecuteQuery: executeQuery }; +}; diff --git a/src/react/update.ts b/src/react/update.ts new file mode 100644 index 0000000..9abece7 --- /dev/null +++ b/src/react/update.ts @@ -0,0 +1,45 @@ +import { useContext, useState } from 'react'; +import type { DataborgQueryResult, QueryVariables } from 'types/client'; +import { DataborgContext } from './context'; + +type UpdateFnOptions = { + variables?: QueryVariables; +}; + +type UseUpdateOptions = {}; + +export const useUpdate = ( + query, + options?: UseUpdateOptions +): [ + (options?: UpdateFnOptions) => Promise, + { + error: Error | null; + loading: boolean; + } +] => { + const client = useContext(DataborgContext); + const [loading, setLoading] = useState(false); + const [error, setError] = useState(null); + + const mutateFunction = async ({ variables }: UpdateFnOptions = {}) => { + if (!client) { + throw new Error('No client provided'); + } + + setLoading(true); + return client + .update({ query, variables, options }) + .then((result) => { + setLoading(false); + return result; + }) + .catch((err) => { + setError(err); + setLoading(false); + throw err; + }); + }; + + return [mutateFunction, { loading, error }]; +}; diff --git a/src/react/util.ts b/src/react/util.ts new file mode 100644 index 0000000..f093139 --- /dev/null +++ b/src/react/util.ts @@ -0,0 +1,38 @@ +import sha256 from 'hash.js/lib/hash/sha/256'; +import * as React from 'react'; +import type { QueryOptions } from 'types/client'; + +const createRequest = ({ + query, + options, + variables, +}: QueryOptions): QueryOptions => { + if (!variables) variables = {}; + return { + key: sha256() + .update(`${JSON.stringify(query)}||${JSON.stringify(variables)}`) + .digest('hex'), + query, + variables, + options, + }; +}; + +export const useRequest = ({ + query, + variables, + options, +}: QueryOptions): QueryOptions => { + const prev = React.useRef(undefined); + + return React.useMemo(() => { + const request = createRequest({ query, variables, options }); + // We manually ensure reference equality if the key hasn't changed + if (prev.current !== undefined && prev.current.key === request.key) { + return prev.current; + } else { + prev.current = request; + return request; + } + }, [query, variables]); +}; diff --git a/src/sparql/parser.ts b/src/sparql/parser.ts new file mode 100644 index 0000000..36251bc --- /dev/null +++ b/src/sparql/parser.ts @@ -0,0 +1,10 @@ +import type { SparqlQuery } from 'sparqljs'; +import { Generator, Parser } from 'sparqljs'; + +export const sparqlParser = new Parser(); +export const sparqlGenerator = new Generator(); + +export const sparqlQueryToString = (query: SparqlQuery): string => { + const queryString = sparqlGenerator.stringify(query); + return queryString; +}; diff --git a/src/sparql/replace.ts b/src/sparql/replace.ts new file mode 100644 index 0000000..825131a --- /dev/null +++ b/src/sparql/replace.ts @@ -0,0 +1,242 @@ +import type { + BgpPattern, + BindPattern, + ConstructQuery, + Expression, + GroupPattern, + InsertDeleteOperation, + OperationExpression, + Pattern, + Quads, + Query, + SparqlQuery, + Term, + Triple, + Update, +} from 'sparqljs'; +import type { QueryVariables } from 'types/client'; + +const isValueURI = (value: string | Term) => { + if (typeof value === 'string') { + return false; + } + + return value.termType === 'NamedNode'; +}; + +const handleVariableType = (value: string | Term) => { + if (typeof value !== 'string' && value.termType !== undefined) { + return value.termType; + } + + return isValueURI(value) ? 'NamedNode' : 'Literal'; +}; + +const handleVariableValue = (value: string | Term) => { + if (typeof value === 'string') { + return value; + } + + return value.value; +}; + +const replaceTerm = ({ + term, + name, + value, +}: { + term: { termType?: string; value?: string }; + name: string; + value: any; +}) => { + // ignore undefined values + if (!term) { + return; + } + // console.log('replace', { term, name, value }); + if (term.termType === 'Variable' && term.value === name) { + term.termType = handleVariableType(value); + term.value = handleVariableValue(value); + } else if (term.termType === 'NamedNode' && term.value === `var://${name}`) { + term.termType = handleVariableType(value); + term.value = handleVariableValue(value); + } +}; + +const replaceExpression = ({ + expression, + variables, +}: { + expression: Expression; + variables: QueryVariables; +}): Expression => { + // console.log(expression); + if (Array.isArray((expression as OperationExpression).args)) { + for (const arg of (expression as OperationExpression).args) { + if ((arg as Term).termType === 'Variable') { + for (const variable of Object.keys(variables)) { + if ((arg as Term).value === variable) { + const value = variables[variable]; + (arg as Term).termType = handleVariableType(value); + (arg as Term).value = handleVariableValue(value); + } + } + } + if (Array.isArray((arg as OperationExpression).args)) { + replaceExpression({ expression: arg as Expression, variables }); + } + } + } + return expression; +}; + +const replaceTermWithVariables = ({ + term, + variables, +}: { + term: Term; + variables: QueryVariables; +}): Term => { + for (const variable of Object.keys(variables)) { + replaceTerm({ + term, + name: variable, + value: variables[variable], + }); + replaceTerm({ + term, + name: variable, + value: variables[variable], + }); + replaceTerm({ + term, + name: variable, + value: variables[variable], + }); + } + return term; +}; + +const replaceWithVariables = ({ + triple, + variables, +}: { + triple: Triple; + variables: QueryVariables; +}): Triple => { + for (const variable of Object.keys(variables)) { + replaceTerm({ + term: triple.subject, + name: variable, + value: variables[variable], + }); + replaceTerm({ + term: triple.predicate as Term, + name: variable, + value: variables[variable], + }); + replaceTerm({ + term: triple.object, + name: variable, + value: variables[variable], + }); + } + return triple; +}; + +const processPatterns = ({ + pattern, + variables, +}: { + pattern: Pattern | Quads; + variables: QueryVariables; +}): Pattern | Quads => { + // console.log(pattern); + if (pattern.type === 'query') { + sparqlWithSubstitution({ + query: pattern as Query, + variables, + }); + } + if (pattern.type === 'graph') { + replaceTermWithVariables({ term: pattern.name, variables }); + } + if ((pattern as BindPattern).expression) { + // console.log(pattern); + // replace vars in anything that is not filter + if (pattern.type !== 'filter') { + replaceExpression({ + expression: (pattern as BindPattern).expression, + variables, + }); + } + } + // if pattern has triples - process directly + if ((pattern as BgpPattern).triples) { + for (const triple of (pattern as BgpPattern).triples) { + replaceWithVariables({ triple, variables }); + } + } + // if pattern has patterns - process them recursively + if ((pattern as GroupPattern).patterns) { + for (const subPattern of (pattern as GroupPattern).patterns) { + processPatterns({ pattern: subPattern, variables }); + } + } + return pattern; +}; + +export const sparqlWithSubstitution = ({ + query, + variables = {}, +}: { + query: SparqlQuery; + variables: QueryVariables; +}): SparqlQuery => { + // traverse the tree and substitute variables if needed + if (Object.keys(variables).length > 0) { + // console.log(query); + // process construct clause + if ((query as ConstructQuery).template) { + for (const pattern of (query as ConstructQuery).template) { + replaceWithVariables({ triple: pattern, variables }); + } + } + + // process where clause + if ((query as Query).where) { + for (const pattern of (query as Query).where) { + processPatterns({ pattern, variables }); + } + } + + // process update clause + if ((query as Update).updates) { + for (const updateEntry of (query as Update).updates) { + // console.log({ updateEntry }); + if ((updateEntry as InsertDeleteOperation).graph !== undefined) { + replaceTermWithVariables({ + term: ((updateEntry as InsertDeleteOperation).graph as any).name, + variables, + }); + } + if ((updateEntry as InsertDeleteOperation).where) { + for (const pattern of (updateEntry as InsertDeleteOperation).where) { + processPatterns({ pattern, variables }); + } + } + if ((updateEntry as InsertDeleteOperation).delete) { + for (const pattern of (updateEntry as InsertDeleteOperation).delete) { + processPatterns({ pattern, variables }); + } + } + if ((updateEntry as InsertDeleteOperation).insert) { + for (const pattern of (updateEntry as InsertDeleteOperation).insert) { + processPatterns({ pattern, variables }); + } + } + } + } + } + return query; +}; diff --git a/src/sparql/results.ts b/src/sparql/results.ts new file mode 100644 index 0000000..cb7e133 --- /dev/null +++ b/src/sparql/results.ts @@ -0,0 +1,149 @@ +import jsonld from 'jsonld'; +import N3 from 'n3'; +import type { SPARQLBindings, SPARQLResults } from 'types/client'; + +const prefixes = { + 'schema:': 'http://schema.org/', + 'rdf:': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', + 'owl:': 'http://www.w3.org/2002/07/owl#', + 'dbo:': 'http://dbpedia.org/ontology/', +}; + +const replacePrefixes = (url: string) => { + for (const prefix in prefixes) { + const prefixUrl = prefixes[prefix]; + if (url.startsWith(prefixUrl)) { + return url.replace(prefixUrl, prefix); + } + } + + return url; +}; + +const parseSimple = (results: SPARQLResults) => { + const head = results.head?.vars; + // if it's a boolean query with a boolean result + // return the given boolean result as-is + if (typeof results.boolean === 'boolean') { + return results.boolean; + } + // otherwise - try to get bindings and process them + const bindings = results.results?.bindings; + const body = bindings?.map((binding) => { + return head.reduce((acc, key) => { + if (binding[key]) { + acc[key] = replacePrefixes(binding[key].value); + } + return acc; + }, {} as SPARQLResults); + }); + return body; +}; + +const parseProperties = ( + results: SPARQLResults, + predicates: SPARQLResultsPredicates +) => { + const bindings = results.results.bindings; + const resultMap = {}; + bindings.forEach((binding) => { + const subject = replacePrefixes(binding[predicates.subjectVariable].value); + const predicate = replacePrefixes( + binding[predicates.predicateVariable].value + ); + const object = replacePrefixes(binding[predicates.objectVariable].value); + resultMap[subject] = resultMap[subject] || {}; + resultMap[subject][predicate] = object; + }); + return resultMap; +}; + +const parseCustom = ( + results: SPARQLResults, + rowProcessor: (row: SPARQLBindings, results: Array) => any +) => { + const bindings = results.results.bindings; + const result = []; + bindings.forEach((binding) => { + rowProcessor(binding, result); + }); + return result; +}; + +interface SPARQLResultsPredicates { + subjectVariable?: string; + predicateVariable?: string; + objectVariable?: string; +} + +interface SPARQLResultsParseOptions extends SPARQLResultsPredicates { + type?: 'simple' | 'properties' | 'custom'; + rowProcessor?: (row: SPARQLBindings, results: Array) => any; +} + +export const parseSparqlResults = ( + results: SPARQLResults, + options: SPARQLResultsParseOptions = {} +): any => { + if (options.type === 'properties') { + return parseProperties(results, options); + } + if (options.type === 'custom') { + return parseCustom(results, options.rowProcessor); + } + // otherwise - fallback to simple processing + return parseSimple(results); +}; + +const turtleToQuads = (turtle: string): Promise => { + return new Promise((resolve, reject) => { + const parser = new N3.Parser(); + let parsed = []; + parser.parse(turtle, (error, quad, prefixes) => { + if (error) { + reject(error); + return; + } + if (quad) { + parsed.push(quad); + return; + } + resolve(parsed); + }); + }); +}; + +const quadsToString = (quads: Array): Promise => { + return new Promise((resolve, reject) => { + const writer = new N3.Writer({ format: 'N-Quads' }); + writer.addQuads(quads); + writer.end((error, result) => { + if (error) { + reject(error); + return; + } + resolve(result); + }); + }); +}; + +export const parseTextResults = async ( + results: string, + prefixes: Record, + frame: object +): Promise => { + const quads = await turtleToQuads(results); + const quadString = await quadsToString(quads); + const doc = await jsonld.fromRDF(quadString, { + format: 'application/n-quads', + }); + // if user requested framing, apply it + if (frame) { + const framed = await jsonld.frame(doc, { + '@context': prefixes ?? {}, + ...frame, + }); + return framed; + } + return doc; +}; diff --git a/src/sparql/tag.ts b/src/sparql/tag.ts new file mode 100644 index 0000000..f4eb502 --- /dev/null +++ b/src/sparql/tag.ts @@ -0,0 +1,38 @@ +import { sparqlParser } from './parser'; + +function parseDocument(source: string) { + const parsed = sparqlParser.parse(source); + // console.log(parsed); + if (!parsed) { + throw new Error('Not a valid SPARQL query.'); + } + return parsed; +} + +function varPrefix() { + return `PREFIX var: \n`; +} + +export function sparql( + literals: string | readonly string[], + ...args: readonly any[] +) { + // if input is one string - convert it to array + // for further processing + if (typeof literals === 'string') { + literals = [literals]; + } + + // set first part of input as variable prefix + // and initial input result + let result = `${varPrefix()}${literals[0]}`; + + // parse all args and join them with rest of literals as a result + args.forEach((arg, i) => { + result += arg; + result += literals[i + 1]; + }); + + // console.log({ literals, args, result }); + return parseDocument(result); +} diff --git a/src/util/url-tag.ts b/src/util/url-tag.ts new file mode 100644 index 0000000..383b5cd --- /dev/null +++ b/src/util/url-tag.ts @@ -0,0 +1,33 @@ +import type { Term } from 'sparqljs'; + +function parseDocument(source: string): Term { + return { + termType: 'NamedNode', + value: source, + equals: (other) => other.value === source, + }; +} + +export function url( + literals: string | readonly string[], + ...args: readonly any[] +) { + // if input is one string - convert it to array + // for further processing + if (typeof literals === 'string') { + literals = [literals]; + } + + // set first part of input as variable prefix + // and initial input result + let result = literals[0]; + + // parse all args and join them with rest of literals as a result + args.forEach((arg, i) => { + result += arg; + result += literals[i + 1]; + }); + + // console.log({ literals, args, result }); + return parseDocument(result); +} diff --git a/test/__snapshots__/sparql-replace.test.ts.snap b/test/__snapshots__/sparql-replace.test.ts.snap new file mode 100644 index 0000000..af02fac --- /dev/null +++ b/test/__snapshots__/sparql-replace.test.ts.snap @@ -0,0 +1,509 @@ +// Vitest Snapshot v1 + +exports[`sparql-replace > should substitute ./test/fixtures/queries/inserts/insert-data.sparql 1`] = ` +"PREFIX owl: +PREFIX rdfs: +INSERT DATA { + owl:Class; + rdfs:label \\"test\\". +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/all.sparql 1`] = `"SELECT * WHERE { \\"test\\" ?p ?o. }"`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/artists-ghent.sparql 1`] = ` +"PREFIX rdfs: +PREFIX dbpedia-owl: +CONSTRUCT { + ?person dbpedia-owl:Artist. + ?person rdfs:label \\"Test\\". + ?person dbpedia-owl:birthPlace ?city. +} +WHERE { + ?person dbpedia-owl:Artist; + rdfs:label \\"Test\\"; + dbpedia-owl:birthPlace ?city. + ?city rdfs:label ?cityName, \\"Ghent\\"@en; + dbpedia-owl:country ?country. + ?country rdfs:label \\"Belgium\\"@en. +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/ask-in-anonymous-node.sparql 1`] = ` +"BASE +ASK WHERE { _:g_0 . }" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/blanks.sparql 1`] = ` +"BASE +CONSTRUCT { + ?s0 ?p0 _:g_2. + _:g_2 _:g_1. + _:g_1 . + _:g_4 ?p0 ?o0. + _:g_4 _:g_3. + _:g_3 . +} +WHERE { + ?s1 ?p1 _:g_5, ; + ?q1 , . + _:g_6 ?p2 ?o2. + ?s3 ?p3 _:g_7. + _:g_7 . + ?s4 ?p4 _:g_8. + _:g_8 ; + , . + ?s5 ?p5 _:g_10. + _:g_10 _:g_9. + _:g_9 . + _:g_12 ?p6 ; + _:g_11. + _:g_11 . + _:g_13 ; + , . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/bsbm3.sparql 1`] = ` +"PREFIX bsbm-inst: +PREFIX bsbm: +PREFIX rdfs: +SELECT ?product ?label WHERE { + ?product rdfs:label ?label. + OPTIONAL { + ?product bsbm:productFeature bsbm-inst:ProductFeature1043; + rdfs:label \\"test\\". + } + FILTER(!(BOUND(?testVar))) +} +ORDER BY (?label) +LIMIT 10" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/bsbm4.sparql 1`] = ` +"PREFIX bsbm-inst: +PREFIX bsbm: +PREFIX rdfs: +PREFIX rdf: +SELECT DISTINCT ?product ?label ?propertyTextual WHERE { + { + ?product rdfs:label ?label; + rdf:type bsbm-inst:ProductType140; + bsbm:productFeature bsbm-inst:ProductFeature4373, bsbm-inst:ProductFeature1475; + bsbm:productPropertyTextual1 ?propertyTextual; + bsbm:productPropertyNumeric1 . + FILTER(?p1 > 160 ) + } + UNION + { + ?product rdfs:label ?label; + rdf:type bsbm-inst:ProductType140; + bsbm:productFeature bsbm-inst:ProductFeature4373, bsbm-inst:ProductFeature4372; + bsbm:productPropertyTextual1 ?propertyTextual; + bsbm:productPropertyNumeric2 \\"123\\". + FILTER(?p2 > 77 ) + } +} +ORDER BY (?label) +OFFSET 5 +LIMIT 10" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/bsbm8.sparql 1`] = ` +"PREFIX bsbm: +PREFIX dc: +PREFIX rev: +PREFIX foaf: +SELECT ?title ?text ?reviewDate ?reviewer ?reviewerName ?rating1 ?rating2 ?rating3 ?rating4 WHERE { + ?review bsbm:reviewFor ; + dc:title ?title; + rev:text ?text. + FILTER(LANGMATCHES(LANG(?text), \\"EN\\")) + ?review bsbm:reviewDate ?reviewDate; + rev:reviewer ?reviewer. + ?reviewer foaf:name ?reviewerName. + OPTIONAL { ?review bsbm:rating1 ?rating1. } + OPTIONAL { ?review bsbm:rating2 ?rating2. } + OPTIONAL { ?review bsbm:rating3 ?rating3. } + OPTIONAL { ?review bsbm:rating4 \\"123\\". } +} +ORDER BY DESC (?reviewDate) +LIMIT 20" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/construct-extra-semicolon.sparql 1`] = ` +"CONSTRUCT { + ?s . + ?s \\"value\\". + ?s ?p . +} +WHERE { ?s ?p . }" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/fedbench-cd1.sparql 1`] = ` +"SELECT ?predicate ?object WHERE { + { ?predicate . } + UNION + { + ?subject ; + ?predicate . + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/inverse-paths-anonymous-node.sparql 1`] = ` +"PREFIX dbpedia-owl: +PREFIX rdfs: +SELECT * WHERE { + ?movie dbpedia-owl:Film; + dbpedia-owl:starring _:g_14. + _:g_14 rdfs:label \\"Brad Pitt\\"@en; + ^dbpedia-owl:starring . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/lists.sparql 1`] = ` +"BASE +CONSTRUCT { + ?s0 ?p0 _:g_17. + _:g_17 . + _:g_17 _:g_18. + _:g_18 _:g_15. + _:g_18 . + _:g_15 . + _:g_15 _:g_16. + _:g_16 . + _:g_16 . + _:g_21 ?p0 ?o0. + _:g_21 . + _:g_21 _:g_22. + _:g_22 _:g_19. + _:g_22 . + _:g_19 . + _:g_19 _:g_20. + _:g_20 . + _:g_20 . +} +WHERE { + ?s1 ?p1 , . + ?p2 ?o2. + ?s3 ?p3 _:g_23. + _:g_23 ; + . + ?s4 ?p4 _:g_24. + _:g_24 ; + _:g_25. + _:g_25 ; + _:g_26. + _:g_26 ; + . + ?s5 ?p5 _:g_29. + _:g_29 ; + _:g_30. + _:g_30 _:g_27; + . + _:g_27 ; + _:g_28. + _:g_28 ; + . + _:g_33 ?p6 ; + ; + _:g_34. + _:g_34 _:g_31; + . + _:g_31 ; + _:g_32. + _:g_32 ; + . + _:g_35 ; + _:g_36. + _:g_36 ; + . + ?s8 ?p8 _:g_38. + _:g_38 _:g_37; + . + _:g_37 ; + , . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/optional.sparql 1`] = ` +"SELECT ?p ?c ?d WHERE { + ?p . + OPTIONAL { ?p . } + ?p ?c. + ?c \\"York\\"@en. +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/optional-subquery.sparql 1`] = ` +"SELECT * WHERE { + { } + OPTIONAL { SELECT * WHERE { ?s ?p . } } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-5-2b.sparql 1`] = ` +"PREFIX foaf: +SELECT ?name ?mbox WHERE { + { ?x foaf:name ?name. } + { ?x foaf:mbox . } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-6-1.sparql 1`] = ` +"PREFIX foaf: +SELECT ?name ?mbox WHERE { + ?x foaf:name ?name. + OPTIONAL { ?x foaf:mbox . } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-7a.sparql 1`] = ` +"PREFIX dc10: +PREFIX dc11: +SELECT ?title WHERE { + { ?book dc10:title \\"test\\". } + UNION + { ?book dc11:title \\"test\\". } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-7c.sparql 1`] = ` +"PREFIX dc10: +PREFIX dc11: +SELECT ?title ?author WHERE { + { + ?book dc10:title ?title; + dc10:creator . + } + UNION + { + ?book dc11:title ?title; + dc11:creator . + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-8-2.sparql 1`] = ` +"PREFIX foaf: +SELECT DISTINCT ?s WHERE { + ?p ?o. + MINUS { foaf:givenName \\"Bob\\". } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-8-3-3b.sparql 1`] = ` +"PREFIX : +SELECT * WHERE { + ?x :p ?n. + MINUS { + ?x :q . + FILTER(?n = ?m) + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-9-2b.sparql 1`] = ` +"PREFIX : +PREFIX dc: +PREFIX rdfs: +SELECT * WHERE { :book1 (dc:title|rdfs:label) \\"example\\". }" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-9-2e.sparql 1`] = ` +"PREFIX foaf: +SELECT ?x ?name WHERE { + ?x foaf:mbox ; + foaf:knows _:g_41. + _:g_41 foaf:knows _:g_40. + _:g_40 foaf:name \\"Test\\". +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-10-1a.sparql 1`] = ` +"PREFIX dc: +PREFIX ns: +SELECT ?title ?price WHERE { + ?x ns:price ?p; + ns:discount \\"123\\". + BIND(?p * (1 - \\"123\\") AS ?price) + FILTER(?price < 20 ) + ?x dc:title ?title. +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-12.sparql 1`] = ` +"PREFIX : +SELECT ?y ?minName WHERE { + :alice :knows ?y. + { + SELECT ?y (MIN(?name) AS ?minName) WHERE { ?y :name \\"test\\". } + GROUP BY ?y + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-13-2-3.sparql 1`] = ` +"PREFIX foaf: +PREFIX dc: +SELECT ?who ?g ?mbox FROM +FROM NAMED +FROM NAMED +WHERE { + ?g dc:publisher ?who. + GRAPH ?g { ?x foaf:mbox . } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-13-3-3.sparql 1`] = ` +"PREFIX data: +PREFIX foaf: +PREFIX rdfs: +SELECT ?mbox ?nick ?ppd FROM NAMED data:aliceFoaf +FROM NAMED data:bobFoaf +WHERE { + GRAPH data:aliceFoaf { + ?alice foaf:mbox ; + foaf:knows ?whom. + ?whom foaf:mbox ; + rdfs:seeAlso ?ppd. + ?ppd foaf:PersonalProfileDocument. + } + GRAPH ?ppd { + ?w foaf:mbox ; + foaf:nick ?nick. + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-18-a.sparql 1`] = ` +"PREFIX dbpedia-owl: +PREFIX rdfs: +SELECT ?movie WHERE { + ?movie dbpedia-owl:Film; + dbpedia-owl:starring _:g_39. + _:g_39 rdfs:label \\"Brad Pitt\\"@en; + ^dbpedia-owl:starring . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-fed-2-1.sparql 1`] = ` +"PREFIX foaf: +SELECT ?name FROM +WHERE { + foaf:knows ?person. + SERVICE { ?person foaf:name \\"test\\". } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-fed-2-2.sparql 1`] = ` +"PREFIX foaf: +SELECT ?person ?interest ?known WHERE { + SERVICE { + ?person foaf:name ?name. + OPTIONAL { + ?person foaf:interest ?interest. + SERVICE { ?person foaf:knows \\"test\\". } + } + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-update-3-1-3-1a.sparql 1`] = ` +"PREFIX dc: +PREFIX xsd: +DELETE { ?book ?p . } +WHERE { + ?book dc:date ?date. + FILTER(?date > \\"1970-01-01T00:00:00-02:00\\"^^xsd:dateTime) + ?book ?p . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-update-3-1-3-2a.sparql 1`] = ` +"PREFIX dc: +PREFIX xsd: +INSERT { GRAPH { ?book ?p . } } +WHERE { + GRAPH { + ?book dc:date ?date. + FILTER(?date > \\"1970-01-01T00:00:00-02:00\\"^^xsd:dateTime) + ?book ?p . + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-update-3-1-3-2b.sparql 1`] = ` +"PREFIX foaf: +INSERT { + GRAPH { + ?person foaf:name ?name. + ?person foaf:mbox \\"test@mail.com\\". + } +} +WHERE { + GRAPH { + ?person foaf:name ?name. + OPTIONAL { ?person foaf:mbox \\"test@mail.com\\". } + } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-update-3-1-3-2c.sparql 1`] = ` +"PREFIX dc: +PREFIX dcmitype: +PREFIX xsd: +INSERT { GRAPH { ?book ?p . } } +WHERE { + GRAPH { + ?book dc:date ?date. + FILTER(?date < \\"2000-01-01T00:00:00-02:00\\"^^xsd:dateTime) + ?book ?p . + } +}; +WITH +DELETE { ?book ?p . } +WHERE { + ?book dc:date ?date; + dc:type dcmitype:PhysicalObject. + FILTER(?date < \\"2000-01-01T00:00:00-02:00\\"^^xsd:dateTime) + ?book ?p . +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/sparql-update-3-1-3-3b.sparql 1`] = ` +"PREFIX foaf: +DELETE WHERE { + GRAPH { + foaf:givenName \\"Fred\\". + ?property1 ?value1. + } + GRAPH { ?property2 ?value2. } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/subquery.sparql 1`] = `"SELECT ?x WHERE { SELECT ?x ?p ?y WHERE { ?x ?p . } }"`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/unicode.sparql 1`] = `"SELECT * WHERE { ?🎁🎀 \\"𓅃 𓃽 𓆟\\". }"`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/union-complex.sparql 1`] = ` +"PREFIX dbpedia: +PREFIX dbpedia-owl: +SELECT * WHERE { + ?city dbpedia-owl:country dbpedia:Belgium. + { ?city \\"test\\". } + UNION + { ?city \\"test\\". } + UNION + { ?city \\"test\\". } +}" +`; + +exports[`sparql-replace > should substitute ./test/fixtures/queries/sparql/using.sparql 1`] = ` +"WITH +DELETE { ?s . } +USING +USING NAMED +WHERE { ?s . }" +`; diff --git a/test/__snapshots__/sparql-tag.test.ts.snap b/test/__snapshots__/sparql-tag.test.ts.snap new file mode 100644 index 0000000..9ff2c8a --- /dev/null +++ b/test/__snapshots__/sparql-tag.test.ts.snap @@ -0,0 +1,8 @@ +// Vitest Snapshot v1 + +exports[`sparql > throws an error on malformed query 1`] = ` +"Parse error on line 2: +...LECT ?s ?p ?o WHERE ?s ?p ?o +-----------------------^ +Expecting '{', got 'VAR'" +`; diff --git a/test/client.test.ts b/test/client.test.ts new file mode 100644 index 0000000..8c22cb6 --- /dev/null +++ b/test/client.test.ts @@ -0,0 +1,586 @@ +import 'isomorphic-unfetch'; +import nock from 'nock'; +import { describe, expect, it } from 'vitest'; +import { DataborgClient, url } from '../src'; +import { + constructQueryResponse, + dbpediaQueryResponseOne, + dbpediaQueryResponseOneAlt, + dbpediaQueryResponseThree, + dbpediaQueryResponseTwo, +} from './fixtures/dbpedia'; + +const client = new DataborgClient({ + queryEndpoint: 'https://dbpedia.org/sparql', + updateEndpoint: 'https://dbpedia.org/update', + prefixes: { + dbpedia: 'http://dbpedia.org/resource/', + rdf: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', + rdfs: 'http://www.w3.org/2000/01/rdf-schema#', + borgwiki: 'https://wiki.databorg.ai/', + }, + // cache: new InMemoryCache(), +}); + +describe('client', () => { + it('executes basic select query', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, dbpediaQueryResponseOne, { + 'Content-Type': 'application/sparql-results+json', + }); + + const query = `SELECT ?s ?p ?o WHERE { ?s ?p ?o } LIMIT 5`; + const result = await client.query({ query }); + expect(result.response).toMatchInlineSnapshot(` + [ + { + "s": "dbo:deathDate", + }, + { + "s": "dbo:birthDate", + }, + { + "s": "dbo:averageAnnualGeneration", + }, + { + "s": "dbo:foalDate", + }, + { + "s": "dbo:torqueOutput", + }, + ] + `); + + scope.done(); + }); + + it('executes basic select query with raw results', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, dbpediaQueryResponseOne, { + 'Content-Type': 'application/sparql-results+json', + }); + + const query = `SELECT ?s ?p ?o WHERE { ?s ?p ?o } LIMIT 5`; + const result = await client.query({ query, options: { rawResults: true } }); + expect(result.response).toMatchInlineSnapshot(` + { + "head": { + "link": [], + "vars": [ + "s", + ], + }, + "results": { + "bindings": [ + { + "s": { + "type": "uri", + "value": "http://dbpedia.org/ontology/deathDate", + }, + }, + { + "s": { + "type": "uri", + "value": "http://dbpedia.org/ontology/birthDate", + }, + }, + { + "s": { + "type": "uri", + "value": "http://dbpedia.org/ontology/averageAnnualGeneration", + }, + }, + { + "s": { + "type": "uri", + "value": "http://dbpedia.org/ontology/foalDate", + }, + }, + { + "s": { + "type": "uri", + "value": "http://dbpedia.org/ontology/torqueOutput", + }, + }, + ], + "distinct": false, + "ordered": true, + }, + } + `); + + scope.done(); + }); + + it('executes basic select query with variable substitution', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, dbpediaQueryResponseTwo, { + 'Content-Type': 'application/sparql-results+json', + }); + + const result = await client.query({ + query: `SELECT ?p ?o WHERE { ?uri ?p ?o } LIMIT 5`, + variables: { uri: url`http://dbpedia.org/ontology/deathDate` }, + }); + expect(result.response).toMatchInlineSnapshot(` + [ + { + "o": "owl:FunctionalProperty", + "p": "rdf:type", + }, + { + "o": "rdf:Property", + "p": "rdf:type", + }, + { + "o": "owl:DatatypeProperty", + "p": "rdf:type", + }, + { + "o": "https://d-nb.info/standards/elementset/gnd#dateOfDeath", + "p": "owl:equivalentProperty", + }, + { + "o": "schema:deathDate", + "p": "owl:equivalentProperty", + }, + ] + `); + + scope.done(); + }); + + it('executes basic select query with prefix insertion', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, dbpediaQueryResponseOneAlt, { + 'Content-Type': 'application/sparql-results+json', + }); + + const result = await client.query({ + query: `SELECT ?o WHERE { ?uri dbpedia:test ?o } LIMIT 5`, + variables: { uri: url`http://dbpedia.org/ontology/deathDate` }, + }); + expect(result.response).toMatchInlineSnapshot(` + [ + { + "o": "dbo:deathDate", + }, + { + "o": "dbo:birthDate", + }, + { + "o": "dbo:averageAnnualGeneration", + }, + { + "o": "dbo:foalDate", + }, + { + "o": "dbo:torqueOutput", + }, + ] + `); + + scope.done(); + }); + + it('executes basic insert query with variable substitution', async () => { + const scope = nock('https://dbpedia.org/').post('/update').reply(204, ''); + + const result = await client.update({ + query: `INSERT DATA { var:uri a dbpedia:Resource . }`, + variables: { uri: 'http://dbpedia.org/Test' }, + }); + expect(result.response).toMatchInlineSnapshot(`null`); + + scope.done(); + }); + + it('executes complex insert query with variables substitution', async () => { + const scope = nock('https://dbpedia.org/') + .post('/update') + .reply(204, (err, result) => { + expect(result).toMatchInlineSnapshot(` +"PREFIX rdf: +PREFIX schema: +INSERT DATA { + GRAPH { + rdf:type schema:Person. + schema:id \\"748cdaf4-2546-47dc-a5a1-71c2343f7f56\\". + schema:name \\"Tim Ermilov\\". + schema:image . + schema:email \\"yamalight@outlook.com\\". + schema:validFrom \\"-1\\". + schema:dateCreated \\"2022-01-17T16:30:58.852Z\\". + schema:dateModified \\"2022-01-17T16:30:58.852Z\\". + } +}" +`); + return ''; + }); + + const result = await client.update({ + query: ` + PREFIX schema: + + INSERT DATA { + GRAPH { + var:user a schema:Person ; + schema:id var:id ; + schema:name var:name ; + schema:image var:image ; + schema:email var:email ; + schema:validFrom var:emailVerified ; + schema:dateCreated var:createdAt ; + schema:dateModified var:updatedAt . + } + } + `, + variables: { + id: '748cdaf4-2546-47dc-a5a1-71c2343f7f56', + user: url`borgwiki:User/748cdaf4-2546-47dc-a5a1-71c2343f7f56`, + createdAt: '2022-01-17T16:30:58.852Z', + updatedAt: '2022-01-17T16:30:58.852Z', + name: 'Tim Ermilov', + email: 'yamalight@outlook.com', + image: url`https://avatars.githubusercontent.com/u/365944?v=4`, + emailVerified: '-1', + }, + }); + expect(result.response).toMatchInlineSnapshot(`null`); + + scope.done(); + }); + + it('executes insert query with zero-length variable substitution', async () => { + const scope = nock('https://dbpedia.org/') + .post('/update') + .reply(204, (err, result) => { + expect(result).toMatchInlineSnapshot(` +"PREFIX rdf: +PREFIX schema: +INSERT DATA { + GRAPH { + rdf:type schema:Person. + schema:name \\"Tim Ermilov\\". + schema:image \\"\\". + } +}" +`); + return ''; + }); + + const result = await client.update({ + query: ` + PREFIX schema: + INSERT DATA { + GRAPH { + var:user a schema:Person ; + schema:name var:name ; + schema:image var:image ; + } + } + `, + variables: { + user: url`borgwiki:User/748cdaf4-2546-47dc-a5a1-71c2343f7f56`, + name: 'Tim Ermilov', + image: '', + }, + }); + expect(result.response).toMatchInlineSnapshot(`null`); + + scope.done(); + }); + + it('throws error on error from server', async () => { + const scope = nock('https://dbpedia.org/') + .post('/update') + .reply(204, (_err, _result, cb) => { + cb(Error('Error from server'), null); + }); + + try { + await client.update({ + query: ` + PREFIX schema: + INSERT DATA { + GRAPH { + var:user a schema:Person ; + schema:name var:name ; + schema:image var:image ; + } + } + `, + variables: { + name: 'Tim Ermilov', + }, + }); + } catch (err) { + expect(err).toMatchInlineSnapshot( + `[FetchError: request to https://dbpedia.org/update failed, reason: Error from server]` + ); + } + + scope.done(); + }); + + it('executes basic construct query with prefix insertion', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, constructQueryResponse, { + 'Content-Type': 'application/n-triples', + }); + + const result = await client.query({ + query: `CONSTRUCT { ?s ?p ?o } WHERE { SELECT ?o WHERE { ?s ?p ?o } }`, + }); + expect(result.response).toMatchInlineSnapshot(` + [ + { + "@id": "http://example.org/mdx1", + "@type": [ + "https://wiki.databorg.ai/Mdx", + ], + "https://wiki.databorg.ai/content": [ + { + "@value": "# Markdown title", + }, + ], + "https://wiki.databorg.ai/indirect": [ + { + "@value": "indirect property", + }, + ], + }, + { + "@id": "http://example.org/mdx2", + "@type": [ + "https://wiki.databorg.ai/Mdx", + ], + "https://wiki.databorg.ai/content": [ + { + "@value": "## Another markdown text", + }, + ], + "https://wiki.databorg.ai/more": [ + { + "@value": "some more stuff", + }, + ], + "https://wiki.databorg.ai/otherIndirect": [ + { + "@value": "other indirect property", + }, + ], + }, + { + "@id": "http://example.org/resource", + "@type": [ + "http://www.w3.org/2000/01/rdf-schema#Class", + ], + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Test resource", + }, + ], + "https://wiki.databorg.ai/direct": [ + { + "@value": "direct property", + }, + ], + "https://wiki.databorg.ai/mdx": [ + { + "@id": "https://wiki.databorg.ai/MdxSeq", + }, + ], + }, + { + "@id": "https://wiki.databorg.ai/MdxSeq", + "@type": [ + "http://www.w3.org/1999/02/22-rdf-syntax-ns#Seq", + ], + "http://www.w3.org/1999/02/22-rdf-syntax-ns#_1": [ + { + "@id": "http://example.org/mdx1", + }, + ], + "http://www.w3.org/1999/02/22-rdf-syntax-ns#_2": [ + { + "@id": "http://example.org/mdx2", + }, + ], + }, + ] + `); + + scope.done(); + }); + + it('executes basic construct query and frames the result', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, constructQueryResponse, { + 'Content-Type': 'application/n-triples', + }); + + const result = await client.query({ + query: `CONSTRUCT { ?s ?p ?o } WHERE { SELECT ?o WHERE { ?s ?p ?o } }`, + options: { + frame: { + '@type': 'http://www.w3.org/2000/01/rdf-schema#Class', + contains: { + '@type': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#Seq', + contains: { + '@type': 'https://wiki.databorg.ai/Mdx', + }, + }, + }, + }, + }); + expect(result.response).toMatchInlineSnapshot(` + { + "@context": { + "borgwiki": "https://wiki.databorg.ai/", + "dbpedia": "http://dbpedia.org/resource/", + "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + }, + "@id": "http://example.org/resource", + "@type": "rdfs:Class", + "borgwiki:direct": "direct property", + "borgwiki:mdx": { + "@id": "borgwiki:MdxSeq", + "@type": "rdf:Seq", + "rdf:_1": { + "@id": "http://example.org/mdx1", + "@type": "borgwiki:Mdx", + "borgwiki:content": "# Markdown title", + "borgwiki:indirect": "indirect property", + }, + "rdf:_2": { + "@id": "http://example.org/mdx2", + "@type": "borgwiki:Mdx", + "borgwiki:content": "## Another markdown text", + "borgwiki:more": "some more stuff", + "borgwiki:otherIndirect": "other indirect property", + }, + }, + "rdfs:label": "Test resource", + } + `); + + scope.done(); + }); + + it('throws error on malformed reply from the server', async () => { + const scope = nock('https://dbpedia.org/') + .post('/sparql') + .reply(200, ``); + + await expect(() => + client.query({ + query: `SELECT ?s ?p ?o WHERE { ?s ?p ?o }`, + }) + ).rejects.toThrow('Unexpected "