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Create mtype taxonomy for placement from KG mtype resources #20
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The property
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eleftherioszisis
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Create mtype taxonomy for placement from KG mtype data
Create mtype taxonomy for placement from KG mtype resources
Jun 27, 2024
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The mtype taxonomy is currently hard-coded here:
blue-cwl/src/blue_cwl/recipes.py
Lines 48 to 75 in 383b4fd
However, with new mtypes, a dynamic way must be added to fetch that information from nexus.
There are two properties needed to be retrieved from mtype resources:
These two properties can be found in the documentation as
morph_class
andsynapse_class
respectively:https://sonata-extension.readthedocs.io/en/latest/sonata_tech.html#fields-for-biophysically-detailed-neurons-model-type-biophysical
Current mtype composition from the latest atlas:
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